Feature/diamond dual mesh manager

src/mesh/DiamondDualConnectivityBuilder.cpp

@@ -44,19 +44,19 @@ DiamondDualConnectivityBuilder::_buildDiamondConnectivityDescriptor(const Connec
 
   diamond_descriptor.node_number_vector.resize(diamond_number_of_nodes);
 
-  for (size_t i = 0; i < m_primal_node_to_dual_node_map.size(); ++i) {
+  parallel_for(m_primal_node_to_dual_node_map.size(), [&](size_t i) {
     const auto [primal_node_id, diamond_dual_node_id] = m_primal_node_to_dual_node_map[i];
 
     diamond_descriptor.node_number_vector[diamond_dual_node_id] = primal_node_number[primal_node_id];
-  }
+  });
 
   const size_t cell_number_shift = max(primal_node_number) + 1;
-  for (size_t i = 0; i < primal_number_of_cells; ++i) {
+  parallel_for(primal_number_of_cells, [&](size_t i) {
     const auto [primal_cell_id, diamond_dual_node_id] = m_primal_cell_to_dual_node_map[i];
 
     diamond_descriptor.node_number_vector[diamond_dual_node_id] =
       primal_cell_number[primal_cell_id] + cell_number_shift;
-  }
+  });
 
   {
     m_primal_face_to_dual_cell_map = FaceIdToCellIdMap{primal_number_of_faces};
@@ -68,10 +68,10 @@ DiamondDualConnectivityBuilder::_buildDiamondConnectivityDescriptor(const Connec
 
   diamond_descriptor.cell_number_vector.resize(diamond_number_of_cells);
   const auto& primal_face_number = primal_connectivity.faceNumber();
-  for (size_t i = 0; i < diamond_number_of_cells; ++i) {
+  parallel_for(diamond_number_of_cells, [&](size_t i) {
     const auto [primal_face_id, dual_cell_id]           = m_primal_face_to_dual_cell_map[i];
     diamond_descriptor.cell_number_vector[dual_cell_id] = primal_face_number[primal_face_id];
-  }
+  });
 
   if constexpr (Dimension == 3) {
     const size_t number_of_edges = diamond_descriptor.edge_to_node_vector.size();
@@ -88,9 +88,9 @@ DiamondDualConnectivityBuilder::_buildDiamondConnectivityDescriptor(const Connec
 
   const auto& primal_face_to_cell_matrix = primal_connectivity.faceToCellMatrix();
 
-  for (FaceId i_face = 0; i_face < primal_number_of_faces; ++i_face) {
-    const size_t i_cell               = i_face;
-    const auto& primal_face_cell_list = primal_face_to_cell_matrix[i_face];
+  parallel_for(primal_number_of_faces, [&](FaceId face_id) {
+    const size_t i_cell               = face_id;
+    const auto& primal_face_cell_list = primal_face_to_cell_matrix[face_id];
 
     if (primal_face_cell_list.size() == 1) {
       diamond_descriptor.cell_type_vector[i_cell] = CellType::Triangle;
@@ -107,22 +107,22 @@ DiamondDualConnectivityBuilder::_buildDiamondConnectivityDescriptor(const Connec
         diamond_descriptor.cell_type_vector[i_cell] = CellType::Diamond;
       }
     }
-  }
+  });
 
   diamond_descriptor.cell_to_node_vector.resize(diamond_number_of_cells);
 
   const auto& primal_face_to_node_matrix              = primal_connectivity.faceToNodeMatrix();
   const auto& primal_face_local_number_in_their_cells = primal_connectivity.faceLocalNumbersInTheirCells();
   const auto& cell_face_is_reversed                   = primal_connectivity.cellFaceIsReversed();
-  for (FaceId i_face = 0; i_face < primal_number_of_faces; ++i_face) {
-    const size_t& i_diamond_cell      = i_face;
-    const auto& primal_face_cell_list = primal_face_to_cell_matrix[i_face];
-    const auto& primal_face_node_list = primal_face_to_node_matrix[i_face];
+  parallel_for(primal_number_of_faces, [&](FaceId face_id) {
+    const size_t& i_diamond_cell      = face_id;
+    const auto& primal_face_cell_list = primal_face_to_cell_matrix[face_id];
+    const auto& primal_face_node_list = primal_face_to_node_matrix[face_id];
     if (primal_face_cell_list.size() == 1) {
       diamond_descriptor.cell_to_node_vector[i_diamond_cell].resize(primal_face_node_list.size() + 1);
 
       const CellId cell_id      = primal_face_cell_list[0];
-      const auto i_face_in_cell = primal_face_local_number_in_their_cells(i_face, 0);
+      const auto i_face_in_cell = primal_face_local_number_in_their_cells(face_id, 0);
 
       for (size_t i_node = 0; i_node < primal_face_node_list.size(); ++i_node) {
         diamond_descriptor.cell_to_node_vector[i_diamond_cell][i_node] = primal_face_node_list[i_node];
@@ -149,7 +149,7 @@ DiamondDualConnectivityBuilder::_buildDiamondConnectivityDescriptor(const Connec
 
       const CellId cell0_id      = primal_face_cell_list[0];
       const CellId cell1_id      = primal_face_cell_list[1];
-      const auto i_face_in_cell0 = primal_face_local_number_in_their_cells(i_face, 0);
+      const auto i_face_in_cell0 = primal_face_local_number_in_their_cells(face_id, 0);
 
       if constexpr (Dimension == 2) {
         Assert(primal_face_node_list.size() == 2);
@@ -176,7 +176,7 @@ DiamondDualConnectivityBuilder::_buildDiamondConnectivityDescriptor(const Connec
         }
       }
     }
-  }
+  });
 }
 
 template <>
@@ -368,7 +368,6 @@ DiamondDualConnectivityBuilder::_buildDiamondConnectivityFrom(const IConnectivit
           face_array[i] = diamond_face_list[i];
         }
         diamond_descriptor.addRefItemList(RefFaceList{primal_ref_face_list.refId(), face_array});
-        std::cout << "stored " << primal_ref_face_list.refId() << '\n';
       }
     }
   }
@@ -420,7 +419,6 @@ DiamondDualConnectivityBuilder::_buildDiamondConnectivityFrom(const IConnectivit
           edge_array[i] = diamond_edge_list[i];
         }
         diamond_descriptor.addRefItemList(RefEdgeList{primal_ref_edge_list.refId(), edge_array});
-        std::cout << "stored " << primal_ref_edge_list.refId() << '\n';
       }
     }
   }
@@ -508,40 +506,38 @@ DiamondDualConnectivityBuilder::_buildDiamondConnectivityFrom(const IConnectivit
 
   m_connectivity = ConnectivityType::build(diamond_descriptor);
 
-  {
-    if constexpr (Dimension == 1) {
-      const auto& node_to_cell_matrix = primal_connectivity.nodeToCellMatrix();
-
-      NodeId dual_node_id            = 0;
-      m_primal_node_to_dual_node_map = [&]() {
-        std::vector<std::pair<NodeId, NodeId>> primal_node_to_dual_node_vector;
-        for (NodeId primal_node_id = 0; primal_node_id < primal_connectivity.numberOfNodes(); ++primal_node_id) {
-          if (node_to_cell_matrix[primal_node_id].size() == 1) {
-            primal_node_to_dual_node_vector.push_back(std::make_pair(primal_node_id, dual_node_id++));
-          }
-        }
-        return convert_to_array(primal_node_to_dual_node_vector);
-      }();
+  if constexpr (Dimension == 1) {
+    const auto& node_to_cell_matrix = primal_connectivity.nodeToCellMatrix();
 
-      m_primal_cell_to_dual_node_map = [&]() {
-        CellIdToNodeIdMap primal_cell_to_dual_node_map{primal_number_of_cells};
-        for (CellId primal_cell_id = 0; primal_cell_id < primal_cell_to_dual_node_map.size(); ++primal_cell_id) {
-          primal_cell_to_dual_node_map[primal_cell_id] = std::make_pair(primal_cell_id, dual_node_id++);
+    NodeId dual_node_id            = 0;
+    m_primal_node_to_dual_node_map = [&]() {
+      std::vector<std::pair<NodeId, NodeId>> primal_node_to_dual_node_vector;
+      for (NodeId primal_node_id = 0; primal_node_id < primal_connectivity.numberOfNodes(); ++primal_node_id) {
+        if (node_to_cell_matrix[primal_node_id].size() == 1) {
+          primal_node_to_dual_node_vector.push_back(std::make_pair(primal_node_id, dual_node_id++));
         }
-        return primal_cell_to_dual_node_map;
-      }();
+      }
+      return convert_to_array(primal_node_to_dual_node_vector);
+    }();
 
-      m_primal_face_to_dual_cell_map = [&]() {
-        FaceIdToCellIdMap primal_face_to_dual_cell_map{primal_connectivity.numberOfFaces()};
-        for (size_t id = 0; id < primal_face_to_dual_cell_map.size(); ++id) {
-          const CellId dual_cell_id   = id;
-          const FaceId primal_face_id = id;
+    m_primal_cell_to_dual_node_map = [&]() {
+      CellIdToNodeIdMap primal_cell_to_dual_node_map{primal_number_of_cells};
+      for (CellId primal_cell_id = 0; primal_cell_id < primal_cell_to_dual_node_map.size(); ++primal_cell_id) {
+        primal_cell_to_dual_node_map[primal_cell_id] = std::make_pair(primal_cell_id, dual_node_id++);
+      }
+      return primal_cell_to_dual_node_map;
+    }();
 
-          primal_face_to_dual_cell_map[id] = std::make_pair(primal_face_id, dual_cell_id);
-        }
-        return primal_face_to_dual_cell_map;
-      }();
-    }
+    m_primal_face_to_dual_cell_map = [&]() {
+      FaceIdToCellIdMap primal_face_to_dual_cell_map{primal_connectivity.numberOfFaces()};
+      for (size_t id = 0; id < primal_face_to_dual_cell_map.size(); ++id) {
+        const CellId dual_cell_id   = id;
+        const FaceId primal_face_id = id;
+
+        primal_face_to_dual_cell_map[id] = std::make_pair(primal_face_id, dual_cell_id);
+      }
+      return primal_face_to_dual_cell_map;
+    }();
   }
 
   m_mapper =