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Change application default behavior and command line options

Stéphane Del Pino requested to merge issue/5 into develop

Pugs used to detect terminal execution type to position flags (color, pause on error in debug mode). Due to MPI compatibility no more detection is performed and by default

  • output is colorized which can be disabled using '--no-color'
  • pause or error is deactivated unless flag '-p' or '--pause-on-error' is used

Fix #5 (closed)

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