Add HDF5 support (!176) · Merge requests · code / pugs

Nov 30, 2023
- Add a simple userdoc for parallel checker · 917ff8f7
  Stéphane Del Pino authored Nov 30, 2023
  
  917ff8f7
- Add unit tests for ParallelChecker · 43795546
  Stéphane Del Pino authored Nov 30, 2023
  
  43795546
Nov 29, 2023
- Prevent hdf5 file locking during tests · 02fb1e0d
  Stéphane Del Pino authored Nov 29, 2023
  
  02fb1e0d
- Set instance pointer to nullptr in destroy() · b15f8f62
  Stéphane Del Pino authored Nov 29, 2023
  
  Useful for tests
  b15f8f62
- Add missing synchronization capabilities · 0af5c409
  Stéphane Del Pino authored Nov 29, 2023
  
  In the case of subitems of greater dimension that items, synchronization was missing for SubItemValuePerItem and SubItemArrayPerItem. This has been missing for ages but it not that useful. Actually, it is more of a completeness functionality. Related tests have been added.
  0af5c409
- Associate numbering to all ItemOfItemType possible instances · eda39e8c
  Stéphane Del Pino authored Nov 29, 2023
  
  eda39e8c
- Add itemLocalNumbersInTheirSubItems template version for genericity · 3e78df21
  Stéphane Del Pino authored Nov 29, 2023
  
  3e78df21
- Improve output management on failure in parallel · bf7a8f8f
  Stéphane Del Pino authored Nov 29, 2023
  
  bf7a8f8f
Nov 02, 2023

git subrepo pull --force packages/HighFive · 8464b196

Stéphane Del Pino authored Nov 2, 2023

subrepo:
  subdir:   "packages/HighFive"
  merged:   "88fcc8989"
upstream:
  origin:   "git@github.com:BlueBrain/HighFive.git"
  branch:   "master"
  commit:   "88fcc8989"
git-subrepo:
  version:  "0.4.6"
  origin:   "git@github.com:ingydotnet/git-subrepo.git"
  commit:   "110b9eb"

8464b196

Oct 29, 2023
- Add broadcast for single std::string value · 88cd46aa
  Stéphane Del Pino authored Oct 29, 2023
  
  88cd46aa
- Fix isSynchronized signature for non const ItemArray · fb89820a
  Stéphane Del Pino authored Oct 29, 2023
  
  fb89820a
Oct 24, 2023
- Fix "cannot open file" test (finally) · ce8cd296
  Stéphane Del Pino authored Oct 24, 2023
  
  ce8cd296
Oct 17, 2023
- Fix connectivity id checking · 09c0f98e
  Stéphane Del Pino authored Oct 17, 2023
  
  09c0f98e
- Fix H5_HAVE_PARALLEL macro use [ci-skip] · 59cbaaa5
  Stéphane Del Pino authored Oct 17, 2023
  
  59cbaaa5
- Add parallel checker support for SubItem{Array,Value}PerItem · d36b8a0d
  Stéphane Del Pino authored Oct 16, 2023
  
  d36b8a0d
Oct 11, 2023
- Use links to avoid duplication of item numbers storage · 33b3de4e
  Stéphane Del Pino authored Oct 11, 2023
  
  33b3de4e
Oct 10, 2023
- Rename dev_utils -> dev · 3e277d18
  Stéphane Del Pino authored Oct 10, 2023
  
  3e277d18
- Add a global variables manager · cf2519aa
  Stéphane Del Pino authored Oct 10, 2023
  
  It contains only a connectivity identifier manager (which will be useful for parallel checker and checkpoint/restart mechanisms). Connectivity has now a unique identifier
  cf2519aa
- Improve execution stats display · 1114f1e2
  Stéphane Del Pino authored Oct 10, 2023
  
  1114f1e2
Oct 09, 2023
- Merge branch 'develop' into feature/parallel-checker · e3ec3bb4
  Stéphane Del Pino authored Oct 9, 2023
  
  e3ec3bb4
Sep 19, 2023
- Add a command line option to set parallel checker database filename · 6b5f1566
  Stéphane Del Pino authored Sep 19, 2023
  
  6b5f1566
- Fix compilation if HDF5 is not present · b36a435a
  Stéphane Del Pino authored Sep 19, 2023
  
  b36a435a
- Add command line options to drive ParallelChecker behavior · d8118c48
  Stéphane Del Pino authored Sep 19, 2023
  
  d8118c48
- Switch to HighFive as an interface to HDF5 · b28ae4ad
  Stéphane Del Pino authored Sep 19, 2023
  
  - add support for ItemArray - began few code redesign/optimizations
  b28ae4ad
Sep 18, 2023
- Add a table constant view utility for ItemArray · 9596985c
  Stéphane Del Pino authored Sep 18, 2023
  
  9596985c
- Revert to no backtrace display as the default behavior · aea12a2d
  Stéphane Del Pino authored Sep 18, 2023
  
  aea12a2d
Sep 08, 2023
- Replace std::source_location by SourceLocation · c335b776
  Stéphane Del Pino authored Sep 8, 2023
  
  c335b776
- git subrepo clone --branch=master git@github.com:BlueBrain/HighFive.git packages/HighFive · 31fefbeb
  Stéphane Del Pino authored Sep 8, 2023
  
  subrepo: subdir: "packages/HighFive" merged: "7340d1fcc" upstream: origin: "git@github.com:BlueBrain/HighFive.git" branch: "master" commit: "7340d1fcc" git-subrepo: version: "0.4.6" origin: "git@github.com:ingydotnet/git-subrepo.git" commit: "110b9eb"
  31fefbeb
- Replace deprecated standard library call · 95783fdd
  Stéphane Del Pino authored Sep 7, 2023
  
  std::random_shuffle -> std::shuffle
  95783fdd
Sep 07, 2023
- Merge branch 'develop' into feature/parallel-checker · 8a10b71b
  Stéphane Del Pino authored Sep 7, 2023
  
  8a10b71b
Jun 21, 2023
- Merge branch 'develop' into feature/parallel-checker · 51603592
  Stéphane Del Pino authored Jun 21, 2023
  
  51603592
Jun 05, 2023
- Merge branch 'develop' into feature/parallel-checker · 21d1d64c
  Stéphane Del Pino authored Jun 5, 2023
  
  21d1d64c
May 08, 2023

Improve HDF5 handling · d7d39477

Stéphane Del Pino authored May 8, 2023

- add support for Table
- add support for TinyMatrix and TinyVector data type
- add unit tests

d7d39477

May 05, 2023
- Simplify error message for invalid attribute type at reading · 98b88497
  Stéphane Del Pino authored May 5, 2023
  
  98b88497
- Fix cmake configuration for missing HDF5 libraries · 7b3bdd4b
  Stéphane Del Pino authored May 5, 2023
  
  7b3bdd4b
- Add a first version of a parallel checking tool · 82d75067
  Stéphane Del Pino authored May 5, 2023
  
  This tool checks if chosen data are synchronized and have same values comparing two runs By now only ItemValue are checked
  82d75067
- Add HDF5 support · eb740b36
  Stéphane Del Pino authored May 5, 2023
  
  - implementation is not completely finished - start to add unit tests
  eb740b36

Add HDF5 support

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