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BuildInfo.cpp
MeshModule.cpp 22.88 KiB
#include <language/modules/MeshModule.hpp>
#include <algebra/TinyVector.hpp>
#include <language/node_processor/ExecutionPolicy.hpp>
#include <language/utils/BinaryOperatorProcessorBuilder.hpp>
#include <language/utils/BuiltinFunctionEmbedder.hpp>
#include <language/utils/CheckpointResumeRepository.hpp>
#include <language/utils/FunctionTable.hpp>
#include <language/utils/ItemArrayVariantFunctionInterpoler.hpp>
#include <language/utils/ItemValueVariantFunctionInterpoler.hpp>
#include <language/utils/OStream.hpp>
#include <language/utils/OperatorRepository.hpp>
#include <language/utils/SymbolTable.hpp>
#include <language/utils/TypeDescriptor.hpp>
#include <mesh/CartesianMeshBuilder.hpp>
#include <mesh/Connectivity.hpp>
#include <mesh/ConnectivityUtils.hpp>
#include <mesh/DualMeshManager.hpp>
#include <mesh/GmshReader.hpp>
#include <mesh/IBoundaryDescriptor.hpp>
#include <mesh/IZoneDescriptor.hpp>
#include <mesh/ItemArrayVariant.hpp>
#include <mesh/ItemValueVariant.hpp>
#include <mesh/Mesh.hpp>
#include <mesh/MeshRelaxer.hpp>
#include <mesh/MeshTransformer.hpp>
#include <mesh/MeshUtils.hpp>
#include <mesh/MeshVariant.hpp>
#include <mesh/NamedBoundaryDescriptor.hpp>
#include <mesh/NamedInterfaceDescriptor.hpp>
#include <mesh/NamedZoneDescriptor.hpp>
#include <mesh/NumberedBoundaryDescriptor.hpp>
#include <mesh/NumberedInterfaceDescriptor.hpp>
#include <mesh/NumberedZoneDescriptor.hpp>
#include <mesh/SubItemArrayPerItemVariant.hpp>
#include <mesh/SubItemValuePerItemVariant.hpp>
#include <utils/Exceptions.hpp>
#include <utils/checkpointing/ReadIBoundaryDescriptor.hpp>
#include <utils/checkpointing/ReadIInterfaceDescriptor.hpp>
#include <utils/checkpointing/ReadIZoneDescriptor.hpp>
#include <utils/checkpointing/ReadItemArrayVariant.hpp>
#include <utils/checkpointing/ReadItemType.hpp>
#include <utils/checkpointing/ReadItemValueVariant.hpp>
#include <utils/checkpointing/ReadMesh.hpp>
#include <utils/checkpointing/ReadSubItemArrayPerItemVariant.hpp>
#include <utils/checkpointing/ReadSubItemValuePerItemVariant.hpp>
#include <utils/checkpointing/WriteIBoundaryDescriptor.hpp>
#include <utils/checkpointing/WriteIInterfaceDescriptor.hpp>
#include <utils/checkpointing/WriteIZoneDescriptor.hpp>
#include <utils/checkpointing/WriteItemArrayVariant.hpp>
#include <utils/checkpointing/WriteItemType.hpp>
#include <utils/checkpointing/WriteItemValueVariant.hpp>
#include <utils/checkpointing/WriteMesh.hpp>
#include <utils/checkpointing/WriteSubItemArrayPerItemVariant.hpp>
#include <utils/checkpointing/WriteSubItemValuePerItemVariant.hpp>
MeshModule::MeshModule()
{
this->_addTypeDescriptor(ast_node_data_type_from<std::shared_ptr<const MeshVariant>>);
this->_addTypeDescriptor(ast_node_data_type_from<std::shared_ptr<const IBoundaryDescriptor>>);
this->_addTypeDescriptor(ast_node_data_type_from<std::shared_ptr<const IInterfaceDescriptor>>);
this->_addTypeDescriptor(ast_node_data_type_from<std::shared_ptr<const IZoneDescriptor>>);
this->_addTypeDescriptor(ast_node_data_type_from<std::shared_ptr<const ItemType>>);
this->_addTypeDescriptor(ast_node_data_type_from<std::shared_ptr<const ItemValueVariant>>);
this->_addTypeDescriptor(ast_node_data_type_from<std::shared_ptr<const ItemArrayVariant>>);
this->_addTypeDescriptor(ast_node_data_type_from<std::shared_ptr<const SubItemValuePerItemVariant>>);
this->_addTypeDescriptor(ast_node_data_type_from<std::shared_ptr<const SubItemArrayPerItemVariant>>);
this->_addBuiltinFunction("cell", std::function(
[]() -> std::shared_ptr<const ItemType> {
return std::make_shared<ItemType>(ItemType::cell);
}
));
this->_addBuiltinFunction("face", std::function(
[]() -> std::shared_ptr<const ItemType> {
return std::make_shared<ItemType>(ItemType::face);
}
));
this->_addBuiltinFunction("edge", std::function(
[]() -> std::shared_ptr<const ItemType> {
return std::make_shared<ItemType>(ItemType::edge);
}
));
this->_addBuiltinFunction("node", std::function(
[]() -> std::shared_ptr<const ItemType> {
return std::make_shared<ItemType>(ItemType::node);
}
));
this->_addBuiltinFunction("readGmsh", std::function(
[](const std::string& file_name) -> std::shared_ptr<const MeshVariant> {
GmshReader gmsh_reader(file_name);
return gmsh_reader.mesh();
}
));
this->_addBuiltinFunction("boundaryName",
std::function(
[](const std::string& boundary_name) -> std::shared_ptr<const IBoundaryDescriptor> {
return std::make_shared<NamedBoundaryDescriptor>(boundary_name);
}
));
this->_addBuiltinFunction("boundaryTag", std::function(
[](int64_t boundary_tag) -> std::shared_ptr<const IBoundaryDescriptor> {
return std::make_shared<NumberedBoundaryDescriptor>(boundary_tag);
}
));
this->_addBuiltinFunction("interfaceName",
std::function(
[](const std::string& interface_name) -> std::shared_ptr<const IInterfaceDescriptor> {
return std::make_shared<NamedInterfaceDescriptor>(interface_name);
}
));
this->_addBuiltinFunction("interfaceTag", std::function(
[](int64_t interface_tag) -> std::shared_ptr<const IInterfaceDescriptor> {
return std::make_shared<NumberedInterfaceDescriptor>(interface_tag);
}
));
this->_addBuiltinFunction("zoneTag", std::function(
[](int64_t zone_tag) -> std::shared_ptr<const IZoneDescriptor> {
return std::make_shared<NumberedZoneDescriptor>(zone_tag);
}
));
this->_addBuiltinFunction("zoneName", std::function(
[](const std::string& zone_name) -> std::shared_ptr<const IZoneDescriptor> {
return std::make_shared<NamedZoneDescriptor>(zone_name);
}
));
this
->_addBuiltinFunction("interpolate",
std::function(
[](std::shared_ptr<const MeshVariant> mesh_v, std::shared_ptr<const ItemType> item_type,
const FunctionSymbolId& function_id) -> std::shared_ptr<const ItemValueVariant> {
return ItemValueVariantFunctionInterpoler{mesh_v, *item_type, function_id}.interpolate();
}
));
this->_addBuiltinFunction(
"interpolate_array",
std::function(
[](std::shared_ptr<const MeshVariant> mesh_v, std::shared_ptr<const ItemType> item_type,
const std::vector<FunctionSymbolId>& function_id_list) -> std::shared_ptr<const ItemArrayVariant> {
return ItemArrayVariantFunctionInterpoler{mesh_v, *item_type, function_id_list}.interpolate();
}
));
this->_addBuiltinFunction("transform",
std::function(
[](std::shared_ptr<const MeshVariant> mesh_v,
const FunctionSymbolId& function_id) -> std::shared_ptr<const MeshVariant> {
return MeshTransformer{}.transform(function_id, mesh_v);
}
));
this->_addBuiltinFunction("relax", std::function(
[](const std::shared_ptr<const MeshVariant>& source_mesh_v,
const std::shared_ptr<const MeshVariant>& destination_mesh_v,
const double& theta) -> std::shared_ptr<const MeshVariant> {
return MeshRelaxer{}.relax(source_mesh_v, destination_mesh_v, theta);
}
));
this->_addBuiltinFunction("check_connectivity_ordering",
std::function(
[](const std::shared_ptr<const MeshVariant>& mesh_v) -> bool {
return checkConnectivityOrdering(mesh_v);
}
));
this->_addBuiltinFunction("cartesianMesh",
std::function(
[](const TinyVector<1> a, const TinyVector<1> b,
const std::vector<uint64_t>& box_sizes) -> std::shared_ptr<const MeshVariant> {
constexpr uint64_t dimension = 1;
if (box_sizes.size() != dimension) {
throw NormalError("expecting " + stringify(dimension) + " dimensions, provided " +
stringify(box_sizes.size()));
}
const TinyVector<dimension, uint64_t> sizes = [&]() {
TinyVector<dimension, uint64_t> s;
for (size_t i = 0; i < dimension; ++i) {
s[i] = box_sizes[i];
}
return s;
}();
CartesianMeshBuilder builder{a, b, sizes};
return builder.mesh();
}
));
this->_addBuiltinFunction("cartesianMesh",
std::function(
[](const TinyVector<2> a, const TinyVector<2> b,
const std::vector<uint64_t>& box_sizes) -> std::shared_ptr<const MeshVariant> {
constexpr uint64_t dimension = 2;
if (box_sizes.size() != dimension) {
throw NormalError("expecting " + stringify(dimension) + " dimensions, provided " +
stringify(box_sizes.size()));
}
const TinyVector<dimension, uint64_t> sizes = [&]() {
TinyVector<dimension, uint64_t> s;
for (size_t i = 0; i < dimension; ++i) {
s[i] = box_sizes[i];
}
return s;
}();
CartesianMeshBuilder builder{a, b, sizes};
return builder.mesh();
}
));
this->_addBuiltinFunction("cartesianMesh",
std::function(
[](const TinyVector<3>& a, const TinyVector<3>& b,
const std::vector<uint64_t>& box_sizes) -> std::shared_ptr<const MeshVariant> {
constexpr uint64_t dimension = 3;
if (box_sizes.size() != dimension) {
throw NormalError("expecting " + stringify(dimension) + " dimensions, provided " +
stringify(box_sizes.size()));
}
const TinyVector<dimension, uint64_t> sizes = [&]() {
TinyVector<dimension, uint64_t> s;
for (size_t i = 0; i < dimension; ++i) {
s[i] = box_sizes[i];
}
return s;
}();
CartesianMeshBuilder builder{a, b, sizes};
return builder.mesh();
}
));
this->_addBuiltinFunction("diamondDual", std::function(
[](const std::shared_ptr<const MeshVariant>& mesh_v)
-> std::shared_ptr<const MeshVariant> {
return DualMeshManager::instance().getDiamondDualMesh(mesh_v);
}
));
this->_addBuiltinFunction("medianDual", std::function(
[](const std::shared_ptr<const MeshVariant>& mesh_v)
-> std::shared_ptr<const MeshVariant> {
return DualMeshManager::instance().getMedianDualMesh(mesh_v);
}
));
}
void
MeshModule::registerOperators() const
{
OperatorRepository& repository = OperatorRepository::instance();
repository.addBinaryOperator<language::shift_left_op>(
std::make_shared<
BinaryOperatorProcessorBuilder<language::shift_left_op, std::shared_ptr<const OStream>,
std::shared_ptr<const OStream>, std::shared_ptr<const MeshVariant>>>());
}
void
MeshModule::registerCheckpointResume() const
{
#ifdef PUGS_HAS_HDF5
CheckpointResumeRepository::instance()
.addCheckpointResume(ast_node_data_type_from<std::shared_ptr<const MeshVariant>>,
std::function([](const std::string& symbol_name, const EmbeddedData& embedded_data,
HighFive::File& file, HighFive::Group& checkpoint_group,
HighFive::Group& symbol_table_group) {
checkpointing::writeMesh(symbol_name, embedded_data, file, checkpoint_group,
symbol_table_group);
}),
std::function([](const std::string& symbol_name,
const HighFive::Group& symbol_table_group) -> EmbeddedData {
return checkpointing::readMesh(symbol_name, symbol_table_group);
}));
CheckpointResumeRepository::instance()
.addCheckpointResume(ast_node_data_type_from<std::shared_ptr<const IBoundaryDescriptor>>,
std::function([](const std::string& symbol_name, const EmbeddedData& embedded_data,
HighFive::File& file, HighFive::Group& checkpoint_group,
HighFive::Group& symbol_table_group) {
checkpointing::writeIBoundaryDescriptor(symbol_name, embedded_data, file, checkpoint_group,
symbol_table_group);
}),
std::function([](const std::string& symbol_name,
const HighFive::Group& symbol_table_group) -> EmbeddedData {
return checkpointing::readIBoundaryDescriptor(symbol_name, symbol_table_group);
}));
CheckpointResumeRepository::instance()
.addCheckpointResume(ast_node_data_type_from<std::shared_ptr<const IInterfaceDescriptor>>,
std::function([](const std::string& symbol_name, const EmbeddedData& embedded_data,
HighFive::File& file, HighFive::Group& checkpoint_group,
HighFive::Group& symbol_table_group) {
checkpointing::writeIInterfaceDescriptor(symbol_name, embedded_data, file, checkpoint_group,
symbol_table_group);
}),
std::function([](const std::string& symbol_name,
const HighFive::Group& symbol_table_group) -> EmbeddedData {
return checkpointing::readIInterfaceDescriptor(symbol_name, symbol_table_group);
}));
CheckpointResumeRepository::instance()
.addCheckpointResume(ast_node_data_type_from<std::shared_ptr<const IZoneDescriptor>>,
std::function([](const std::string& symbol_name, const EmbeddedData& embedded_data,
HighFive::File& file, HighFive::Group& checkpoint_group,
HighFive::Group& symbol_table_group) {
checkpointing::writeIZoneDescriptor(symbol_name, embedded_data, file, checkpoint_group,
symbol_table_group);
}),
std::function([](const std::string& symbol_name,
const HighFive::Group& symbol_table_group) -> EmbeddedData {
return checkpointing::readIZoneDescriptor(symbol_name, symbol_table_group);
}));
CheckpointResumeRepository::instance()
.addCheckpointResume(ast_node_data_type_from<std::shared_ptr<const ItemType>>,
std::function([](const std::string& symbol_name, const EmbeddedData& embedded_data,
HighFive::File& file, HighFive::Group& checkpoint_group,
HighFive::Group& symbol_table_group) {
checkpointing::writeItemType(symbol_name, embedded_data, file, checkpoint_group,
symbol_table_group);
}),
std::function([](const std::string& symbol_name,
const HighFive::Group& symbol_table_group) -> EmbeddedData {
return checkpointing::readItemType(symbol_name, symbol_table_group);
}));
CheckpointResumeRepository::instance()
.addCheckpointResume(ast_node_data_type_from<std::shared_ptr<const ItemArrayVariant>>,
std::function([](const std::string& symbol_name, const EmbeddedData& embedded_data,
HighFive::File& file, HighFive::Group& checkpoint_group,
HighFive::Group& symbol_table_group) {
checkpointing::writeItemArrayVariant(symbol_name, embedded_data, file, checkpoint_group,
symbol_table_group);
}),
std::function([](const std::string& symbol_name,
const HighFive::Group& symbol_table_group) -> EmbeddedData {
return checkpointing::readItemArrayVariant(symbol_name, symbol_table_group);
}));
CheckpointResumeRepository::instance()
.addCheckpointResume(ast_node_data_type_from<std::shared_ptr<const ItemValueVariant>>,
std::function([](const std::string& symbol_name, const EmbeddedData& embedded_data,
HighFive::File& file, HighFive::Group& checkpoint_group,
HighFive::Group& symbol_table_group) {
checkpointing::writeItemValueVariant(symbol_name, embedded_data, file, checkpoint_group,
symbol_table_group);
}),
std::function([](const std::string& symbol_name,
const HighFive::Group& symbol_table_group) -> EmbeddedData {
return checkpointing::readItemValueVariant(symbol_name, symbol_table_group);
}));
CheckpointResumeRepository::instance()
.addCheckpointResume(ast_node_data_type_from<std::shared_ptr<const SubItemArrayPerItemVariant>>,
std::function([](const std::string& symbol_name, const EmbeddedData& embedded_data,
HighFive::File& file, HighFive::Group& checkpoint_group,
HighFive::Group& symbol_table_group) {
checkpointing::writeSubItemArrayPerItemVariant(symbol_name, embedded_data, file,
checkpoint_group, symbol_table_group);
}),
std::function([](const std::string& symbol_name,
const HighFive::Group& symbol_table_group) -> EmbeddedData {
return checkpointing::readSubItemArrayPerItemVariant(symbol_name, symbol_table_group);
}));
CheckpointResumeRepository::instance()
.addCheckpointResume(ast_node_data_type_from<std::shared_ptr<const SubItemValuePerItemVariant>>,
std::function([](const std::string& symbol_name, const EmbeddedData& embedded_data,
HighFive::File& file, HighFive::Group& checkpoint_group,
HighFive::Group& symbol_table_group) {
checkpointing::writeSubItemValuePerItemVariant(symbol_name, embedded_data, file,
checkpoint_group, symbol_table_group);
}),
std::function([](const std::string& symbol_name,
const HighFive::Group& symbol_table_group) -> EmbeddedData {
return checkpointing::readSubItemValuePerItemVariant(symbol_name, symbol_table_group);
}));
#endif // PUGS_HAS_HDF5
}