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ConnectivityDispatcher.cpp
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Stéphane Del Pino authored
[ci-skip]
Stéphane Del Pino authored[ci-skip]
ConnectivityDispatcher.cpp 35.95 KiB
#include <mesh/ConnectivityDispatcher.hpp>
#include <mesh/ItemOfItemType.hpp>
#include <utils/CRSGraph.hpp>
#include <utils/Partitioner.hpp>
#include <iostream>
template <size_t Dimension>
template <ItemType item_type>
void
ConnectivityDispatcher<Dimension>::_buildNewOwner()
{
std::cout << "#### " << rang::fgB::yellow << itemName(item_type) << rang::fg::reset << " _buildNewOwner() ####\n";
if constexpr (item_type == ItemType::cell) {
CRSGraph connectivity_graph = m_connectivity.ownCellToCellGraph();
Partitioner P;
Array new_owner_array = P.partition(connectivity_graph);
std::cout << "new_owner_array = " << new_owner_array << '\n';
const auto& cell_is_owned = m_connectivity.cellIsOwned();
std::cout << "cell_is_owned = " << cell_is_owned << '\n';
CellValue<int> cell_new_owner(m_connectivity);
size_t i = 0;
for (CellId cell_id = 0; cell_id < m_connectivity.numberOfCells(); ++cell_id) {
if (cell_is_owned[cell_id]) {
cell_new_owner[cell_id] = new_owner_array[i++];
}
}
synchronize(cell_new_owner);
std::cout << "cell_new_owner = " << cell_new_owner << '\n';
std::cout << "cell_number = " << m_connectivity.template number<item_type>() << '\n';
this->_dispatchedInfo<ItemType::cell>().m_new_owner = cell_new_owner;
} else {
const auto& item_to_cell_matrix = m_connectivity.template getItemToItemMatrix<item_type, ItemType::cell>();
const auto& cell_number = m_connectivity.cellNumber();
const auto& cell_new_owner = this->_dispatchedInfo<ItemType::cell>().m_new_owner;
using ItemId = ItemIdT<item_type>;
ItemValue<int, item_type> item_new_owner(m_connectivity);
parallel_for(
item_new_owner.numberOfItems(), PUGS_LAMBDA(const ItemId& l) {
const auto& item_to_cell = item_to_cell_matrix[l];
CellId Jmin = item_to_cell[0];
for (size_t j = 1; j < item_to_cell.size(); ++j) {
const CellId J = item_to_cell[j];
if (cell_number[J] < cell_number[Jmin]) {
Jmin = J;
}
}
item_new_owner[l] = cell_new_owner[Jmin];
});
synchronize(item_new_owner);
std::cout << itemName(item_type) << "_new_owner = " << item_new_owner << '\n';
std::cout << itemName(item_type) << "_number = " << m_connectivity.template number<item_type>() << '\n';
this->_dispatchedInfo<item_type>().m_new_owner = item_new_owner;
}
}
template <size_t Dimension>
template <ItemType item_type>
void
ConnectivityDispatcher<Dimension>::_buildItemToExchangeLists()
{
this->_buildItemListToSend<item_type>();
this->_buildNumberOfItemToExchange<item_type>();
if constexpr (item_type == ItemType::cell) {
this->_buildCellNumberIdMap();
}
this->_buildRecvItemIdCorrespondanceByProc<item_type>();
}
template <size_t Dimension>
template <ItemType item_type>
void
ConnectivityDispatcher<Dimension>::_buildItemListToSend()
{
if constexpr (item_type == ItemType::cell) {
const auto& node_to_cell_matrix = m_connectivity.nodeToCellMatrix();
const auto& cell_to_node_matrix = m_connectivity.cellToNodeMatrix();
const auto& cell_is_owned = m_connectivity.cellIsOwned();
const auto& cell_new_owner = this->_dispatchedInfo<ItemType::cell>().m_new_owner;
const auto& cell_number = m_connectivity.cellNumber();
std::cout << "- cell_new_owner = " << cell_new_owner << '\n';
std::vector<std::vector<CellId>> cell_vector_to_send_by_proc(parallel::size());
Array<bool> send_to_rank(parallel::size());
for (CellId cell_id = 0; cell_id < m_connectivity.numberOfCells(); ++cell_id) {
send_to_rank.fill(false);
const auto& cell_to_node = cell_to_node_matrix[cell_id];
std::cout << rang::fgB::cyan << " looking for cell " << cell_id << "(" << cell_number[cell_id] << ")"
<< rang::fg::reset << "\n";
if (cell_is_owned[cell_id]) {
for (size_t i_node = 0; i_node < cell_to_node.size(); ++i_node) {
const NodeId& node_id = cell_to_node[i_node];
const auto& node_to_cell = node_to_cell_matrix[node_id];
for (size_t i_node_cell = 0; i_node_cell < node_to_cell.size(); ++i_node_cell) {
const CellId& node_cell = node_to_cell[i_node_cell];
send_to_rank[cell_new_owner[node_cell]] = true;
std::cout << rang::fgB::green << " storing cell " << node_cell << "(" << cell_number[node_cell] << ")"
<< rang::fg::reset << "\n";
}
}
for (size_t i_rank = 0; i_rank < send_to_rank.size(); ++i_rank) {
if (send_to_rank[i_rank]) {
cell_vector_to_send_by_proc[i_rank].push_back(cell_id);
}
}
}
}
auto& cell_list_to_send_by_proc = this->_dispatchedInfo<ItemType::cell>().m_list_to_send_by_proc;
cell_list_to_send_by_proc.resize(parallel::size());
for (size_t i = 0; i < parallel::size(); ++i) {
cell_list_to_send_by_proc[i] = convert_to_array(cell_vector_to_send_by_proc[i]);
}
for (size_t i = 0; i < parallel::size(); ++i) {
std::cout << itemName(item_type) << " send to " << i << ": " << cell_list_to_send_by_proc[i] << '\n';
}
} else {
const auto& cell_list_to_send_by_proc = this->_dispatchedInfo<ItemType::cell>().m_list_to_send_by_proc;
const auto& item_is_owned = m_connectivity.template isOwned<item_type>();
using ItemId = ItemIdT<item_type>;
const auto& cell_to_sub_item_matrix = m_connectivity.template getItemToItemMatrix<ItemType::cell, item_type>();
auto& item_list_to_send_by_proc = this->_dispatchedInfo<item_type>().m_list_to_send_by_proc;
item_list_to_send_by_proc.resize(parallel::size());
for (size_t i_rank = 0; i_rank < parallel::size(); ++i_rank) {
Array<bool> tag(m_connectivity.template numberOf<item_type>());
tag.fill(false);
std::vector<ItemId> item_id_vector;
for (size_t j = 0; j < cell_list_to_send_by_proc[i_rank].size(); ++j) {
const CellId& cell_id = cell_list_to_send_by_proc[i_rank][j];
const auto& cell_sub_item_list = cell_to_sub_item_matrix[cell_id];
for (size_t r = 0; r < cell_sub_item_list.size(); ++r) {
const ItemId& item_id = cell_sub_item_list[r];
if (item_is_owned[item_id] and (not tag[item_id])) {
item_id_vector.push_back(item_id);
tag[item_id] = true;
}
}
}
item_list_to_send_by_proc[i_rank] = convert_to_array(item_id_vector);
}
for (size_t i = 0; i < parallel::size(); ++i) {
std::cout << itemName(item_type) << " send to " << i << ": " << item_list_to_send_by_proc[i] << '\n';
}
}
}
template <size_t Dimension>
template <ItemType item_type>
void
ConnectivityDispatcher<Dimension>::_buildNumberOfItemToExchange()
{
const auto& item_list_to_send_by_proc = this->_dispatchedInfo<item_type>().m_list_to_send_by_proc;
Array<unsigned int> nb_item_to_send_by_proc(parallel::size());
for (size_t i = 0; i < parallel::size(); ++i) {
nb_item_to_send_by_proc[i] = item_list_to_send_by_proc[i].size();
}
this->_dispatchedInfo<item_type>().m_list_to_send_size_by_proc = nb_item_to_send_by_proc;
std::cout << rang::fgB::yellow << itemName(item_type) << " nb_item_to_send_by_proc = " << nb_item_to_send_by_proc
<< rang::fg::reset << '\n';
this->_dispatchedInfo<item_type>().m_list_to_recv_size_by_proc = parallel::allToAll(nb_item_to_send_by_proc);
std::cout << rang::fgB::blue << itemName(item_type)
<< " m_list_to_recv_size_by_proc = " << this->_dispatchedInfo<item_type>().m_list_to_recv_size_by_proc
<< rang::fg::reset << '\n';
}
template <size_t Dimension>
template <typename DataType, ItemType item_type, typename ConnectivityPtr>
void
ConnectivityDispatcher<Dimension>::_gatherFrom(const ItemValue<DataType, item_type, ConnectivityPtr>& data_to_gather,
Array<std::remove_const_t<DataType>>& gathered_array)
{
std::vector<Array<const DataType>> recv_item_data_by_proc = this->exchange(data_to_gather);
const auto& recv_id_correspondance_by_proc = this->_dispatchedInfo<item_type>().m_recv_id_correspondance_by_proc;
Assert(recv_id_correspondance_by_proc.size() == parallel::size());
gathered_array = Array<std::remove_const_t<DataType>>(this->_dispatchedInfo<item_type>().m_number_to_id_map.size());
for (size_t i_rank = 0; i_rank < parallel::size(); ++i_rank) {
Assert(recv_id_correspondance_by_proc[i_rank].size() == recv_item_data_by_proc[i_rank].size());
for (size_t r = 0; r < recv_id_correspondance_by_proc[i_rank].size(); ++r) {
const auto& item_id = recv_id_correspondance_by_proc[i_rank][r];
gathered_array[item_id] = recv_item_data_by_proc[i_rank][r];
}
}
}
template <size_t Dimension>
template <typename DataType, typename ItemOfItem, typename ConnectivityPtr>
void
ConnectivityDispatcher<Dimension>::_gatherFrom(
const SubItemValuePerItem<DataType, ItemOfItem, ConnectivityPtr>& data_to_gather,
Array<std::remove_const_t<DataType>>& gathered_array)
{
using MutableDataType = std::remove_const_t<DataType>;
constexpr ItemType item_type = ItemOfItem::item_type;
using ItemId = ItemIdT<item_type>;
const auto& item_list_to_send_by_proc = this->_dispatchedInfo<item_type>().m_list_to_send_by_proc;
std::vector<Array<MutableDataType>> data_to_send_by_proc(parallel::size());
for (size_t i_rank = 0; i_rank < parallel::size(); ++i_rank) {
std::vector<MutableDataType> data_by_item_vector;
for (size_t j = 0; j < item_list_to_send_by_proc[i_rank].size(); ++j) {
const ItemId& item_id = item_list_to_send_by_proc[i_rank][j];
const auto& item_data = data_to_gather.itemArray(item_id);
for (size_t l = 0; l < item_data.size(); ++l) {
data_by_item_vector.push_back(item_data[l]);
}
}
data_to_send_by_proc[i_rank] = convert_to_array(data_by_item_vector);
}
const auto& number_of_sub_item_per_item_to_recv_by_proc =
this->_dispatchedInfo<ItemOfItem>().m_number_of_sub_item_per_item_to_recv_by_proc;
std::vector<Array<MutableDataType>> recv_data_to_gather_by_proc(parallel::size());
for (size_t i_rank = 0; i_rank < parallel::size(); ++i_rank) {
recv_data_to_gather_by_proc[i_rank] =
Array<MutableDataType>(sum(number_of_sub_item_per_item_to_recv_by_proc[i_rank]));
}
parallel::exchange(data_to_send_by_proc, recv_data_to_gather_by_proc);
const size_t recv_array_size = [&] {
size_t size = 0;
for (size_t i_rank = 0; i_rank < parallel::size(); ++i_rank) {
size += recv_data_to_gather_by_proc[i_rank].size();
}
return size;
}();
gathered_array = Array<std::remove_const_t<DataType>>(recv_array_size);
{
size_t l = 0;
for (size_t i_rank = 0; i_rank < parallel::size(); ++i_rank) {
for (size_t j = 0; j < recv_data_to_gather_by_proc[i_rank].size(); ++j) {
gathered_array[l++] = recv_data_to_gather_by_proc[i_rank][j];
}
}
Assert(gathered_array.size() == l);
}
}
template <size_t Dimension>
void
ConnectivityDispatcher<Dimension>::_buildCellNumberIdMap()
{
const auto recv_cell_number_by_proc = this->exchange(m_connectivity.template number<ItemType::cell>());
auto& cell_number_id_map = this->_dispatchedInfo<ItemType::cell>().m_number_to_id_map;
for (size_t i_rank = 0; i_rank < parallel::size(); ++i_rank) {
CellId cell_id = 0;
for (size_t i = 0; i < recv_cell_number_by_proc[i_rank].size(); ++i) {
const int cell_number = recv_cell_number_by_proc[i_rank][i];
auto [iterator, inserted] = cell_number_id_map.insert(std::make_pair(cell_number, cell_id));
if (inserted)
++cell_id;
}
}
}
template <size_t Dimension>
template <typename ItemOfItemT>
void
ConnectivityDispatcher<Dimension>::_buildSubItemNumberToIdMap()
{
static_assert(ItemOfItemT::item_type == ItemType::cell, "Dispatcher requires to be built using cell as master "
"entities");
const auto& cell_sub_item_number_to_recv_by_proc =
this->_dispatchedInfo<ItemOfItemT>().m_sub_item_numbers_to_recv_by_proc;
auto& sub_item_number_id_map = this->_dispatchedInfo<ItemOfItemT::sub_item_type>().m_number_to_id_map;
for (size_t i_rank = 0; i_rank < parallel::size(); ++i_rank) {
int sub_item_id = 0;
for (size_t i = 0; i < cell_sub_item_number_to_recv_by_proc[i_rank].size(); ++i) {
int sub_item_number = cell_sub_item_number_to_recv_by_proc[i_rank][i];
auto [iterator, inserted] = sub_item_number_id_map.insert(std::make_pair(sub_item_number, sub_item_id));
if (inserted)
sub_item_id++;
}
}
}
template <size_t Dimension>
template <typename SubItemOfItemT>
void
ConnectivityDispatcher<Dimension>::_buildNumberOfSubItemPerItemToRecvByProc()
{
const auto& item_to_sub_item_matrix =
m_connectivity.template getItemToItemMatrix<SubItemOfItemT::item_type, SubItemOfItemT::sub_item_type>();
ItemValue<int, SubItemOfItemT::item_type> number_of_sub_item_per_item(m_connectivity);
using ItemId = ItemIdT<SubItemOfItemT::item_type>;
parallel_for(
number_of_sub_item_per_item.numberOfItems(),
PUGS_LAMBDA(const ItemId& j) { number_of_sub_item_per_item[j] = item_to_sub_item_matrix[j].size(); });
this->_dispatchedInfo<SubItemOfItemT>().m_number_of_sub_item_per_item_to_recv_by_proc =
this->exchange(number_of_sub_item_per_item);
}
template <size_t Dimension>
template <typename SubItemOfItemT>
void
ConnectivityDispatcher<Dimension>::_buildSubItemNumbersToRecvByProc()
{
const std::vector<Array<const int>> sub_item_numbers_to_send_by_proc = [&]() {
const auto& item_to_sub_item_matrix =
m_connectivity.template getItemToItemMatrix<SubItemOfItemT::item_type, SubItemOfItemT::sub_item_type>();
const auto& sub_item_number = m_connectivity.template number<SubItemOfItemT::sub_item_type>();
using ItemId = ItemIdT<SubItemOfItemT::item_type>;
using SubItemId = ItemIdT<SubItemOfItemT::sub_item_type>;
std::vector<Array<const int>> mutable_sub_item_numbers_to_send_by_proc(parallel::size());
for (size_t i_rank = 0; i_rank < parallel::size(); ++i_rank) {
const auto& item_list_to_send_by_proc = this->_dispatchedInfo<SubItemOfItemT::item_type>().m_list_to_send_by_proc;
std::vector<int> sub_item_numbers_by_item_vector;
for (size_t j = 0; j < item_list_to_send_by_proc[i_rank].size(); ++j) {
const ItemId& item_id = item_list_to_send_by_proc[i_rank][j];
const auto& sub_item_list = item_to_sub_item_matrix[item_id];
for (size_t r = 0; r < sub_item_list.size(); ++r) {
const SubItemId& sub_item_id = sub_item_list[r];
sub_item_numbers_by_item_vector.push_back(sub_item_number[sub_item_id]);
}
}
mutable_sub_item_numbers_to_send_by_proc[i_rank] = convert_to_array(sub_item_numbers_by_item_vector);
}
return mutable_sub_item_numbers_to_send_by_proc;
}();
const auto& number_of_sub_item_per_item_to_recv_by_proc =
this->_dispatchedInfo<SubItemOfItemT>().m_number_of_sub_item_per_item_to_recv_by_proc;
std::vector<Array<int>> sub_item_numbers_to_recv_by_proc(parallel::size());
for (size_t i_rank = 0; i_rank < parallel::size(); ++i_rank) {
sub_item_numbers_to_recv_by_proc[i_rank] = Array<int>(sum(number_of_sub_item_per_item_to_recv_by_proc[i_rank]));
}
parallel::exchange(sub_item_numbers_to_send_by_proc, sub_item_numbers_to_recv_by_proc);
auto& const_sub_item_numbers_to_recv_by_proc =
this->_dispatchedInfo<SubItemOfItemT>().m_sub_item_numbers_to_recv_by_proc;
const_sub_item_numbers_to_recv_by_proc.resize(parallel::size());
for (size_t i_rank = 0; i_rank < parallel::size(); ++i_rank) {
const_sub_item_numbers_to_recv_by_proc[i_rank] = sub_item_numbers_to_recv_by_proc[i_rank];
}
}
template <size_t Dimension>
template <typename ItemOfItemT>
void
ConnectivityDispatcher<Dimension>::_buildItemToSubItemDescriptor()
{
constexpr ItemType item_type = ItemOfItemT::item_type;
constexpr ItemType sub_item_type = ItemOfItemT::sub_item_type;
const auto& item_list_to_recv_size_by_proc = this->_dispatchedInfo<item_type>().m_list_to_recv_size_by_proc;
const auto& number_of_sub_item_per_item_to_recv_by_proc =
this->_dispatchedInfo<ItemOfItemT>().m_number_of_sub_item_per_item_to_recv_by_proc;
const auto& sub_item_number_id_map = this->_dispatchedInfo<sub_item_type>().m_number_to_id_map;
const auto& recv_item_of_item_numbers_by_proc =
this->_dispatchedInfo<ItemOfItemT>().m_sub_item_numbers_to_recv_by_proc;
std::vector<std::vector<unsigned int>> item_to_subitem_legacy;
size_t number_of_node_by_cell = 0;
for (size_t i_rank = 0; i_rank < parallel::size(); ++i_rank) {
int l = 0;
for (size_t i = 0; i < item_list_to_recv_size_by_proc[i_rank]; ++i) {
std::vector<unsigned int> sub_item_vector;
for (int k = 0; k < number_of_sub_item_per_item_to_recv_by_proc[i_rank][i]; ++k) {
const auto& searched_sub_item_id = sub_item_number_id_map.find(recv_item_of_item_numbers_by_proc[i_rank][l++]);
Assert(searched_sub_item_id != sub_item_number_id_map.end());
sub_item_vector.push_back(searched_sub_item_id->second);
}
number_of_node_by_cell += sub_item_vector.size();
item_to_subitem_legacy.emplace_back(sub_item_vector);
}
}
Array<unsigned int> item_to_subitem_row_map(item_to_subitem_legacy.size() + 1);
Array<unsigned int> item_to_subitem_list(number_of_node_by_cell);
item_to_subitem_row_map.fill(10000000);
item_to_subitem_list.fill(10000000);
item_to_subitem_row_map[0] = 0;
for (size_t i = 0; i < item_to_subitem_legacy.size(); ++i) {
item_to_subitem_row_map[i + 1] = item_to_subitem_row_map[i] + item_to_subitem_legacy[i].size();
}
size_t l = 0;
for (size_t i = 0; i < item_to_subitem_legacy.size(); ++i) {
const auto& subitem_list = item_to_subitem_legacy[i];
for (size_t j = 0; j < subitem_list.size(); ++j, ++l) {
item_to_subitem_list[l] = subitem_list[j];
}
}
m_new_descriptor.itemOfItemVector<ItemOfItemT>() = ConnectivityMatrix(item_to_subitem_row_map, item_to_subitem_list);
}
template <size_t Dimension>
template <ItemType item_type>
void
ConnectivityDispatcher<Dimension>::_buildRecvItemIdCorrespondanceByProc()
{
const auto& item_list_to_send_by_proc = this->_dispatchedInfo<item_type>().m_list_to_send_by_proc;
using ItemId = ItemIdT<item_type>;
std::vector<Array<const ItemId>> recv_item_id_correspondance_by_proc(parallel::size());
const ItemValue<const int, item_type>& item_number = m_connectivity.template number<item_type>();
std::vector<Array<const int>> send_item_number_by_proc(parallel::size());
for (size_t i_rank = 0; i_rank < parallel::size(); ++i_rank) {
Array<int> send_item_number(item_list_to_send_by_proc[i_rank].size());
const Array<const ItemId> send_item_id = item_list_to_send_by_proc[i_rank];
parallel_for(
send_item_number.size(), PUGS_LAMBDA(size_t j) { send_item_number[j] = item_number[send_item_id[j]]; });
send_item_number_by_proc[i_rank] = send_item_number;
}
const auto& item_list_to_recv_size_by_proc = this->_dispatchedInfo<item_type>().m_list_to_recv_size_by_proc;
std::vector<Array<int>> recv_item_number_by_proc(parallel::size());
for (size_t i_rank = 0; i_rank < parallel::size(); ++i_rank) {
recv_item_number_by_proc[i_rank] = Array<int>(item_list_to_recv_size_by_proc[i_rank]);
}
parallel::exchange(send_item_number_by_proc, recv_item_number_by_proc);
const auto& item_number_to_id_map = this->_dispatchedInfo<item_type>().m_number_to_id_map;
for (size_t i_rank = 0; i_rank < item_list_to_recv_size_by_proc.size(); ++i_rank) {
Array<ItemId> item_id_correspondance(item_list_to_recv_size_by_proc[i_rank]);
for (size_t l = 0; l < item_list_to_recv_size_by_proc[i_rank]; ++l) {
const int& recv_item_number = recv_item_number_by_proc[i_rank][l];
const auto& searched_item_id = item_number_to_id_map.find(recv_item_number);
Assert(searched_item_id != item_number_to_id_map.end());
item_id_correspondance[l] = searched_item_id->second;
}
recv_item_id_correspondance_by_proc[i_rank] = item_id_correspondance;
}
this->_dispatchedInfo<item_type>().m_recv_id_correspondance_by_proc = recv_item_id_correspondance_by_proc;
}
template <size_t Dimension>
template <ItemType item_type>
void
ConnectivityDispatcher<Dimension>::_buildItemReferenceList()
{
using ItemId = ItemIdT<item_type>;
// Getting references
Array<const size_t> number_of_item_ref_list_per_proc =
parallel::allGather(m_connectivity.template numberOfRefItemList<item_type>());
const size_t number_of_item_list_sender = [&]() {
size_t mutable_number_of_item_list_sender = 0;
for (size_t i_rank = 0; i_rank < parallel::size(); ++i_rank) {
mutable_number_of_item_list_sender += (number_of_item_ref_list_per_proc[i_rank] > 0);
}
return mutable_number_of_item_list_sender;
}();
if (number_of_item_list_sender > 0) {
if (number_of_item_list_sender > 1) {
std::cerr << __FILE__ << ':' << __LINE__ << ": " << rang::fgB::red
<< "need to check that knowing procs know the same item_ref_lists!" << rang::fg::reset << '\n';
}
if (number_of_item_list_sender < parallel::size()) {
const size_t sender_rank = [&]() {
size_t i_rank = 0;
for (; i_rank < parallel::size(); ++i_rank) {
if (number_of_item_ref_list_per_proc[i_rank] > 0) {
break;
}
}
return i_rank;
}();
Assert(number_of_item_list_sender < parallel::size());
// sending is boundary property
Array<RefItemListBase::Type> ref_item_list_type{number_of_item_ref_list_per_proc[sender_rank]};
if (parallel::rank() == sender_rank) {
for (size_t i_item_ref_list = 0; i_item_ref_list < m_connectivity.template numberOfRefItemList<item_type>();
++i_item_ref_list) {
auto item_ref_list = m_connectivity.template refItemList<item_type>(i_item_ref_list);
ref_item_list_type[i_item_ref_list] = item_ref_list.type();
}
}
parallel::broadcast(ref_item_list_type, sender_rank);
// sending references tags
Array<RefId::TagNumberType> ref_tag_list{number_of_item_ref_list_per_proc[sender_rank]};
if (parallel::rank() == sender_rank) {
for (size_t i_item_ref_list = 0; i_item_ref_list < m_connectivity.template numberOfRefItemList<item_type>();
++i_item_ref_list) {
auto item_ref_list = m_connectivity.template refItemList<item_type>(i_item_ref_list);
ref_tag_list[i_item_ref_list] = item_ref_list.refId().tagNumber();
}
}
parallel::broadcast(ref_tag_list, sender_rank);
// sending references name size
Array<size_t> ref_name_size_list{number_of_item_ref_list_per_proc[sender_rank]};
if (parallel::rank() == sender_rank) {
for (size_t i_item_ref_list = 0; i_item_ref_list < m_connectivity.template numberOfRefItemList<item_type>();
++i_item_ref_list) {
auto item_ref_list = m_connectivity.template refItemList<item_type>(i_item_ref_list);
ref_name_size_list[i_item_ref_list] = item_ref_list.refId().tagName().size();
}
}
parallel::broadcast(ref_name_size_list, sender_rank);
// sending references name size
Array<RefId::TagNameType::value_type> ref_name_cat{sum(ref_name_size_list)};
if (parallel::rank() == sender_rank) {
size_t i_char = 0;
for (size_t i_item_ref_list = 0; i_item_ref_list < m_connectivity.template numberOfRefItemList<item_type>();
++i_item_ref_list) {
auto item_ref_list = m_connectivity.template refItemList<item_type>(i_item_ref_list);
for (auto c : item_ref_list.refId().tagName()) {
ref_name_cat[i_char++] = c;
}
}
}
parallel::broadcast(ref_name_cat, sender_rank);
std::vector<RefId> ref_id_list = [&]() {
std::vector<RefId> mutable_ref_id_list;
mutable_ref_id_list.reserve(ref_name_size_list.size());
size_t begining = 0;
for (size_t i_ref = 0; i_ref < ref_name_size_list.size(); ++i_ref) {
const size_t size = ref_name_size_list[i_ref];
mutable_ref_id_list.emplace_back(ref_tag_list[i_ref], std::string{&(ref_name_cat[begining]), size});
begining += size;
}
return mutable_ref_id_list;
}();
using block_type = int32_t;
constexpr size_t block_size = sizeof(block_type);
const size_t nb_block = ref_id_list.size() / block_size + (ref_id_list.size() % block_size != 0);
for (size_t i_block = 0; i_block < nb_block; ++i_block) {
ItemValue<block_type, item_type> item_references(m_connectivity);
item_references.fill(0);
if (m_connectivity.template numberOfRefItemList<item_type>() > 0) {
const size_t max_i_ref = std::min(ref_id_list.size(), block_size * (i_block + 1));
for (size_t i_ref = block_size * i_block, i = 0; i_ref < max_i_ref; ++i_ref, ++i) {
block_type ref_bit{1 << i};
auto item_ref_list = m_connectivity.template refItemList<item_type>(i_ref);
const auto& item_list = item_ref_list.list();
for (size_t i_item = 0; i_item < item_list.size(); ++i_item) {
const ItemId& item_id = item_list[i_item];
item_references[item_id] |= ref_bit;
}
}
}
const auto& nb_item_to_send_by_proc = this->_dispatchedInfo<item_type>().m_list_to_send_size_by_proc;
const auto& send_item_id_by_proc = this->_dispatchedInfo<item_type>().m_list_to_send_by_proc;
std::vector<Array<const block_type>> send_item_refs_by_proc(parallel::size());
for (size_t i_rank = 0; i_rank < parallel::size(); ++i_rank) {
Array<block_type> send_item_refs(nb_item_to_send_by_proc[i_rank]);
const Array<const ItemId> send_item_id = send_item_id_by_proc[i_rank];
parallel_for(
send_item_id.size(), PUGS_LAMBDA(size_t l) {
const ItemId& item_id = send_item_id[l];
send_item_refs[l] = item_references[item_id];
});
send_item_refs_by_proc[i_rank] = send_item_refs;
}
std::vector<Array<block_type>> recv_item_refs_by_proc(parallel::size());
for (size_t i_rank = 0; i_rank < parallel::size(); ++i_rank) {
recv_item_refs_by_proc[i_rank] =
Array<block_type>(this->_dispatchedInfo<item_type>().m_list_to_recv_size_by_proc[i_rank]);
}
parallel::exchange(send_item_refs_by_proc, recv_item_refs_by_proc);
const auto& recv_item_id_correspondance_by_proc =
this->_dispatchedInfo<item_type>().m_recv_id_correspondance_by_proc;
std::vector<block_type> item_refs(m_new_descriptor.template itemNumberVector<item_type>().size());
for (size_t i_rank = 0; i_rank < parallel::size(); ++i_rank) {
for (size_t r = 0; r < recv_item_refs_by_proc[i_rank].size(); ++r) {
const ItemId& item_id = recv_item_id_correspondance_by_proc[i_rank][r];
item_refs[item_id] = recv_item_refs_by_proc[i_rank][r];
}
}
const size_t max_i_ref = std::min(ref_id_list.size(), block_size * (i_block + 1));
for (size_t i_ref = block_size * i_block, i = 0; i_ref < max_i_ref; ++i_ref, ++i) {
block_type ref_bit{1 << i};
std::vector<ItemId> item_id_vector;
for (uint32_t i_item = 0; i_item < item_refs.size(); ++i_item) {
const ItemId item_id{i_item};
if (item_refs[item_id] & ref_bit) {
item_id_vector.push_back(item_id);
}
}
Array<const ItemId> item_id_array = convert_to_array(item_id_vector);
RefItemListBase::Type type = ref_item_list_type[i_ref];
m_new_descriptor.addRefItemList(RefItemList<item_type>(ref_id_list[i_ref], item_id_array, type));
}
}
}
}
}
template <size_t Dimension>
void
ConnectivityDispatcher<Dimension>::_dispatchEdges()
{
if constexpr (Dimension > 2) {
this->_buildNumberOfSubItemPerItemToRecvByProc<EdgeOfCell>();
this->_buildSubItemNumbersToRecvByProc<EdgeOfCell>();
this->_buildSubItemNumberToIdMap<EdgeOfCell>();
this->_buildItemToExchangeLists<ItemType::edge>();
m_new_descriptor.setEdgeNumberVector([&] {
Array<int> edge_number_vector;
this->_gatherFrom(m_connectivity.template number<ItemType::edge>(), edge_number_vector);
return edge_number_vector;
}());
this->_buildItemToSubItemDescriptor<EdgeOfCell>();
this->_buildNumberOfSubItemPerItemToRecvByProc<NodeOfEdge>();
this->_buildSubItemNumbersToRecvByProc<NodeOfEdge>();
this->_buildItemToSubItemDescriptor<NodeOfEdge>();
this->_buildNumberOfSubItemPerItemToRecvByProc<EdgeOfFace>();
this->_buildSubItemNumbersToRecvByProc<EdgeOfFace>();
this->_buildItemToSubItemDescriptor<EdgeOfFace>();
m_new_descriptor.setFaceEdgeIsReversed([&] {
Array<bool> face_edge_is_reversed;
this->_gatherFrom(m_connectivity.faceEdgeIsReversed(), face_edge_is_reversed);
return face_edge_is_reversed;
}());
m_new_descriptor.setEdgeOwnerVector([&] {
Array<int> edge_owner_vector;
this->_gatherFrom(this->_dispatchedInfo<ItemType::edge>().m_new_owner, edge_owner_vector);
return edge_owner_vector;
}());
this->_buildItemReferenceList<ItemType::edge>();
}
}
template <size_t Dimension>
void
ConnectivityDispatcher<Dimension>::_dispatchFaces()
{
if constexpr (Dimension > 1) {
this->_buildNumberOfSubItemPerItemToRecvByProc<FaceOfCell>();
this->_buildSubItemNumbersToRecvByProc<FaceOfCell>();
this->_buildSubItemNumberToIdMap<FaceOfCell>();
this->_buildItemToExchangeLists<ItemType::face>();
this->_buildNumberOfSubItemPerItemToRecvByProc<NodeOfFace>();
this->_buildSubItemNumbersToRecvByProc<NodeOfFace>();
this->_buildItemToSubItemDescriptor<NodeOfFace>();
m_new_descriptor.setFaceNumberVector([&] {
Array<int> face_number_vector;
this->_gatherFrom(m_connectivity.template number<ItemType::face>(), face_number_vector);
return face_number_vector;
}());
this->_buildItemToSubItemDescriptor<FaceOfCell>();
m_new_descriptor.setCellFaceIsReversed([&] {
Array<bool> cell_face_is_reversed;
this->_gatherFrom(m_connectivity.cellFaceIsReversed(), cell_face_is_reversed);
return cell_face_is_reversed;
}());
m_new_descriptor.setFaceOwnerVector([&] {
Array<int> face_owner_vector;
this->_gatherFrom(this->_dispatchedInfo<ItemType::face>().m_new_owner, face_owner_vector);
return face_owner_vector;
}());
this->_buildItemReferenceList<ItemType::face>();
}
}
template <size_t Dimension>
ConnectivityDispatcher<Dimension>::ConnectivityDispatcher(const ConnectivityType& connectivity)
: m_connectivity(connectivity)
{
{
Array connectivity_id_list = parallel::allGather(connectivity.id());
if (min(connectivity_id_list) != max(connectivity_id_list)) {
throw UnexpectedError("connectivity ids diverged in parallel");
}
}
std::cout << "--- initial mesh ---\n";
std::cout << "--- cells\n";
for (CellId cell_id = 0; cell_id < connectivity.numberOfCells(); ++cell_id) {
std::cout << "cell " << cell_id << "(" << connectivity.cellNumber()[cell_id] << "):" << rang::style::bold
<< ((connectivity.cellIsOwned()[cell_id]) ? 'O' : 'G') << rang::style::reset << ": ";
auto node_list = connectivity.cellToNodeMatrix()[cell_id];
for (size_t i_node = 0; i_node < node_list.size(); ++i_node) {
const NodeId node_id = node_list[i_node];
std::cout << ' ' << node_id << "(" << connectivity.nodeNumber()[node_id] << "):" << rang::style::bold
<< ((connectivity.nodeIsOwned()[node_id]) ? 'O' : 'G') << rang::style::reset;
}
std::cout << '\n';
}
if constexpr (Dimension > 1) {
std::cout << "--- faces\n";
for (FaceId face_id = 0; face_id < connectivity.numberOfFaces(); ++face_id) {
std::cout << "cell " << face_id << "(" << connectivity.faceNumber()[face_id] << "):" << rang::style::bold
<< ((connectivity.faceIsOwned()[face_id]) ? 'O' : 'G') << rang::style::reset << ": ";
auto node_list = connectivity.faceToNodeMatrix()[face_id];
for (size_t i_node = 0; i_node < node_list.size(); ++i_node) {
const NodeId node_id = node_list[i_node];
std::cout << ' ' << node_id << "(" << connectivity.nodeNumber()[node_id] << "):" << rang::style::bold
<< ((connectivity.nodeIsOwned()[node_id]) ? 'O' : 'G') << rang::style::reset;
}
std::cout << '\n';
}
}
std::cout << "--- nodes\n";
for (NodeId node_id = 0; node_id < connectivity.numberOfNodes(); ++node_id) {
std::cout << "node " << node_id << "(" << connectivity.nodeNumber()[node_id] << "):" << rang::style::bold
<< ((connectivity.nodeIsOwned()[node_id]) ? 'O' : 'G') << rang::style::reset << ": ";
std::cout << '\n';
}
this->_buildNewOwner<ItemType::cell>();
if constexpr (Dimension > 1) {
this->_buildNewOwner<ItemType::face>();
}
if constexpr (Dimension > 2) {
this->_buildNewOwner<ItemType::edge>();
}
this->_buildNewOwner<ItemType::node>();
this->_buildItemToExchangeLists<ItemType::cell>();
this->_buildNumberOfSubItemPerItemToRecvByProc<NodeOfCell>();
this->_buildSubItemNumbersToRecvByProc<NodeOfCell>();
m_new_descriptor.setCellNumberVector([&] {
Array<int> cell_number_vector;
this->_gatherFrom(m_connectivity.template number<ItemType::cell>(), cell_number_vector);
return cell_number_vector;
}());
this->_buildSubItemNumberToIdMap<NodeOfCell>();
this->_buildItemToExchangeLists<ItemType::node>();
m_new_descriptor.setCellTypeVector([&] {
Array<CellType> cell_type_vector;
this->_gatherFrom(m_connectivity.cellType(), cell_type_vector);
return cell_type_vector;
}());
m_new_descriptor.setCellOwnerVector([&] {
Array<int> cell_owner_vector;
this->_gatherFrom(this->_dispatchedInfo<ItemType::cell>().m_new_owner, cell_owner_vector);
return cell_owner_vector;
}());
m_new_descriptor.setNodeNumberVector([&] {
Array<int> node_number_vector;
this->_gatherFrom(m_connectivity.template number<ItemType::node>(), node_number_vector);
return node_number_vector;
}());
m_new_descriptor.setNodeOwnerVector([&] {
Array<int> node_owner_vector;
this->_gatherFrom(this->_dispatchedInfo<ItemType::node>().m_new_owner, node_owner_vector);
return node_owner_vector;
}());
this->_buildItemToSubItemDescriptor<NodeOfCell>();
this->_buildItemReferenceList<ItemType::cell>();
this->_dispatchFaces();
this->_dispatchEdges();
this->_buildItemReferenceList<ItemType::node>();
std::cout << "m_new_descriptor.nodeNumberVector() = " << m_new_descriptor.nodeNumberVector() << '\n';
std::cout << "m_new_descriptor.nodeOwnerVector() = " << m_new_descriptor.nodeOwnerVector() << '\n';
std::cout << "m_new_descriptor.cellOwnerVector().size() = " << m_new_descriptor.cellOwnerVector().size()
<< '\n';
std::cout << "m_new_descriptor.cellTypeVector().size() = " << m_new_descriptor.cellTypeVector().size()
<< '\n';
std::cout << "m_new_descriptor.cellToNodeMatrix().numberOfRows() = "
<< m_new_descriptor.cellToNodeMatrix().numberOfRows() << '\n';
for (CellId cell_id = 0; cell_id < m_new_descriptor.cellToNodeMatrix().numberOfRows(); ++cell_id) {
std::cout << "- cell [" << cell_id << "](" // << m_new_descriptor.cellNumberVector()[cell_id]
<< ")" << m_new_descriptor.cellToNodeMatrix()[cell_id] << '\n';
}
std::cout.flush();
parallel::barrier();
m_dispatched_connectivity = ConnectivityType::build(m_new_descriptor);
{
Array connectivity_id_list = parallel::allGather(m_dispatched_connectivity->id());
if (min(connectivity_id_list) != max(connectivity_id_list)) {
throw UnexpectedError("connectivity ids diverged in parallel");
}
}
}
template ConnectivityDispatcher<1>::ConnectivityDispatcher(const ConnectivityType&);
template ConnectivityDispatcher<2>::ConnectivityDispatcher(const ConnectivityType&);
template ConnectivityDispatcher<3>::ConnectivityDispatcher(const ConnectivityType&);