diff --git a/src/utils/checkpointing/Resume.cpp b/src/utils/checkpointing/Resume.cpp
index 184011049c31febd92f53439bf1389b49fbbd6f2..9d58e1d9dec4050f218d3efad71e5194ccaa5111 100644
--- a/src/utils/checkpointing/Resume.cpp
+++ b/src/utils/checkpointing/Resume.cpp
@@ -233,15 +233,19 @@ resume()
}
break;
}
+ // LCOV_EXCL_START
default: {
throw NotImplementedError(symbol_name + " of type " + dataTypeName(attribute.dataType().contentType()));
}
+ // LCOV_EXCL_STOP
}
break;
}
+ // LCOV_EXCL_START
default: {
throw NotImplementedError(symbol_name + " of type " + dataTypeName(attribute.dataType()));
}
+ // LCOV_EXCL_STOP
}
}
@@ -286,9 +290,11 @@ resume()
checkpointing::ResumingData::destroy();
}
+ // LCOV_EXCL_START
catch (HighFive::Exception& e) {
throw NormalError(e.what());
}
+ // LCOV_EXCL_STOP
}
#else // PUGS_HAS_HDF5
diff --git a/src/utils/checkpointing/ResumingData.cpp b/src/utils/checkpointing/ResumingData.cpp
index 2fc7996cc09f1d99d2ec827d5ea66ef2abe8b39a..2301f199496df36343dbe301feb5df11d3fcd9f2 100644
--- a/src/utils/checkpointing/ResumingData.cpp
+++ b/src/utils/checkpointing/ResumingData.cpp
@@ -368,33 +368,41 @@ ResumingData::_getFunctionIds(const HighFive::Group& checkpoint, std::shared_ptr
for (auto symbol : p_symbol_table->symbolList()) {
if (symbol.attributes().dataType() == ASTNodeDataType::function_t) {
if (not function_group.exist(symbol.name())) {
+ // LCOV_EXCL_START
std::ostringstream error_msg;
error_msg << "cannot find function " << rang::fgB::yellow << symbol.name() << rang::fg::reset << " in "
<< rang::fgB::cyan << checkpoint.getFile().getName() << rang::fg::reset;
- throw NormalError(error_msg.str());
- } else {
+ throw UnexpectedError(error_msg.str());
+ // LCOV_EXCL_STOP
+ } else { // LCOV_EXCL_LINE
const HighFive::Group function = function_group.getGroup(symbol.name());
const size_t stored_function_id = function.getAttribute("id").read<size_t>();
const size_t function_id = std::get<size_t>(symbol.attributes().value());
if (symbol_table_id != function.getAttribute("symbol_table_id").read<size_t>()) {
+ // LCOV_EXCL_START
std::ostringstream error_msg;
error_msg << "symbol table of function " << rang::fgB::yellow << symbol.name() << rang::fg::reset
<< " does not match the one stored in " << rang::fgB::cyan << checkpoint.getFile().getName()
<< rang::fg::reset;
- throw NormalError(error_msg.str());
+ throw UnexpectedError(error_msg.str());
+ // LCOV_EXCL_STOP
} else if (function_id != stored_function_id) {
+ // LCOV_EXCL_START
std::ostringstream error_msg;
error_msg << "id (" << function_id << ") of function " << rang::fgB::yellow << symbol.name()
<< rang::fg::reset << " does not match the one stored in " << rang::fgB::cyan
<< checkpoint.getFile().getName() << rang::fg::reset << "(" << stored_function_id << ")";
- throw NormalError(error_msg.str());
- } else {
+ throw UnexpectedError(error_msg.str());
+ // LCOV_EXCL_STOP
+ } else { // LCOV_EXCL_LINE
if (m_id_to_function_symbol_id_map.contains(function_id)) {
+ // LCOV_EXCL_START
std::ostringstream error_msg;
error_msg << "id (" << function_id << ") of function " << rang::fgB::yellow << symbol.name()
<< rang::fg::reset << " is duplicated";
throw UnexpectedError(error_msg.str());
- }
+ // LCOV_EXCL_STOP
+ } // LCOV_EXCL_LINE
m_id_to_function_symbol_id_map[function_id] =
std::make_shared<FunctionSymbolId>(function_id, p_symbol_table);
}
@@ -420,7 +428,9 @@ ResumingData::iConnectivity(const size_t connectivity_id) const
{
auto i_id_to_connectivity = m_id_to_iconnectivity_map.find(connectivity_id);
if (i_id_to_connectivity == m_id_to_iconnectivity_map.end()) {
+ // LCOV_EXCL_START
throw UnexpectedError("cannot find connectivity of id " + std::to_string(connectivity_id));
+ // LCOV_EXCL_STOP
} else {
return i_id_to_connectivity->second;
}
@@ -431,7 +441,9 @@ ResumingData::meshVariant(const size_t mesh_id) const
{
auto i_id_to_mesh = m_id_to_mesh_variant_map.find(mesh_id);
if (i_id_to_mesh == m_id_to_mesh_variant_map.end()) {
+ // LCOV_EXCL_START
throw UnexpectedError("cannot find mesh of id " + std::to_string(mesh_id));
+ // LCOV_EXCL_STOP
} else {
return i_id_to_mesh->second;
}
@@ -442,7 +454,9 @@ ResumingData::functionSymbolId(const size_t function_symbol_id) const
{
auto i_id_to_function_symbol_id = m_id_to_function_symbol_id_map.find(function_symbol_id);
if (i_id_to_function_symbol_id == m_id_to_function_symbol_id_map.end()) {
+ // LCOV_EXCL_START
throw UnexpectedError("cannot find function_symbol_id of id " + std::to_string(function_symbol_id));
+ // LCOV_EXCL_STOP
} else {
return i_id_to_function_symbol_id->second;
}
diff --git a/src/utils/checkpointing/SetResumeFrom.cpp b/src/utils/checkpointing/SetResumeFrom.cpp
index 81502da2f74e9d0e71d812d8692d7318b3135e71..7f040e7caaaf7c4eb8a27017f608127507b59cf0 100644
--- a/src/utils/checkpointing/SetResumeFrom.cpp
+++ b/src/utils/checkpointing/SetResumeFrom.cpp
@@ -9,13 +9,19 @@
#include <utils/Exceptions.hpp>
#include <utils/HighFivePugsUtils.hpp>
+#include <utils/Messenger.hpp>
void
setResumeFrom(const std::string& filename, const uint64_t& checkpoint_number, std::ostream& os)
{
try {
HighFive::SilenceHDF5 m_silence_hdf5{true};
- HighFive::File file(filename, HighFive::File::ReadWrite);
+
+ HighFive::FileAccessProps fapl;
+ fapl.add(HighFive::MPIOFileAccess{parallel::Messenger::getInstance().comm(), MPI_INFO_NULL});
+ fapl.add(HighFive::MPIOCollectiveMetadata{});
+
+ HighFive::File file(filename, HighFive::File::ReadWrite, fapl);
const std::string checkpoint_name = "checkpoint_" + std::to_string(checkpoint_number);
if (not file.exist(checkpoint_name)) {
diff --git a/tests/CMakeLists.txt b/tests/CMakeLists.txt
index 6a7c235ffd1c118f88b60e39e8f81d13290add53..c3a25aec9b243afb7e5bd9b951286f322606099b 100644
--- a/tests/CMakeLists.txt
+++ b/tests/CMakeLists.txt
@@ -7,8 +7,7 @@ include_directories(${PUGS_SOURCE_DIR}/tests)
set(checkpointing_sequential_TESTS
# this one should enventually integrate parallel tests
test_checkpointing_Checkpoint_sequential.cpp
-
- test_checkpointing_SetResumeFrom.cpp
+ test_checkpointing_Resume_sequential.cpp
)
add_executable (unit_tests
@@ -171,6 +170,7 @@ add_executable (unit_tests
test_checkpointing_PrintScriptFrom.cpp
test_checkpointing_ResumingManager.cpp
test_checkpointing_ResumingUtils.cpp
+ test_checkpointing_SetResumeFrom.cpp
)
if(PUGS_HAS_HDF5)
diff --git a/tests/test_checkpointing_Checkpoint.cpp b/tests/test_checkpointing_Checkpoint.cpp
index cfcf67188c2f43261f21e4d9ece28bdc50c9c060..317683b26dfca317b4b6f0059b6a8e55c8d5e4f0 100644
--- a/tests/test_checkpointing_Checkpoint.cpp
+++ b/tests/test_checkpointing_Checkpoint.cpp
@@ -75,6 +75,9 @@ TEST_CASE("checkpointing_Checkpoint", "[utils/checkpointing]")
{
#ifdef PUGS_HAS_HDF5
+ ResumingManager::destroy();
+ ResumingManager::create();
+
std::string tmp_dirname;
{
{
diff --git a/tests/test_checkpointing_Checkpoint_sequential.cpp b/tests/test_checkpointing_Checkpoint_sequential.cpp
index 23ddd807415ddf2111a6f8e010c60431010f47f9..160404f8835a7fcf6a0c94700ae79d023391b2ca 100644
--- a/tests/test_checkpointing_Checkpoint_sequential.cpp
+++ b/tests/test_checkpointing_Checkpoint_sequential.cpp
@@ -77,6 +77,9 @@ TEST_CASE("checkpointing_Checkpoint_sequential", "[utils/checkpointing]")
{
#ifdef PUGS_HAS_HDF5
+ ResumingManager::destroy();
+ ResumingManager::create();
+
std::string tmp_dirname;
{
{
diff --git a/tests/test_checkpointing_Resume_sequential.cpp b/tests/test_checkpointing_Resume_sequential.cpp
new file mode 100644
index 0000000000000000000000000000000000000000..e8a3aa1038a3089c5188bfb2dc19f4dc6a4abdbc
--- /dev/null
+++ b/tests/test_checkpointing_Resume_sequential.cpp
@@ -0,0 +1,729 @@
+#include <catch2/catch_approx.hpp>
+#include <catch2/catch_test_macros.hpp>
+#include <catch2/matchers/catch_matchers_predicate.hpp>
+
+#include <utils/checkpointing/Resume.hpp>
+#include <utils/pugs_config.hpp>
+
+#ifdef PUGS_HAS_HDF5
+
+#include <MeshDataBaseForTests.hpp>
+#include <dev/ParallelChecker.hpp>
+#include <language/ast/ASTBuilder.hpp>
+#include <language/ast/ASTExecutionStack.hpp>
+#include <language/ast/ASTModulesImporter.hpp>
+#include <language/ast/ASTNodeDataTypeBuilder.hpp>
+#include <language/ast/ASTNodeDeclarationToAffectationConverter.hpp>
+#include <language/ast/ASTNodeExpressionBuilder.hpp>
+#include <language/ast/ASTNodeTypeCleaner.hpp>
+#include <language/ast/ASTSymbolTableBuilder.hpp>
+#include <language/modules/MathModule.hpp>
+#include <language/utils/ASTCheckpointsInfo.hpp>
+#include <language/utils/CheckpointResumeRepository.hpp>
+#include <mesh/DualMeshType.hpp>
+#include <utils/ExecutionStatManager.hpp>
+#include <utils/checkpointing/DualMeshTypeHFType.hpp>
+#include <utils/checkpointing/SetResumeFrom.hpp>
+
+class ASTCheckpointsInfoTester
+{
+ private:
+ ASTCheckpointsInfo m_ast_checkpoint_info;
+
+ public:
+ ASTCheckpointsInfoTester(const ASTNode& root_node) : m_ast_checkpoint_info(root_node) {}
+ ~ASTCheckpointsInfoTester() = default;
+};
+
+#define RUN_AST(data) \
+ { \
+ ExecutionStatManager::create(); \
+ ParallelChecker::create(); \
+ CheckpointResumeRepository::create(); \
+ \
+ TAO_PEGTL_NAMESPACE::string_input input{data, "test.pgs"}; \
+ auto ast = ASTBuilder::build(input); \
+ \
+ ASTModulesImporter{*ast}; \
+ ASTNodeTypeCleaner<language::import_instruction>{*ast}; \
+ \
+ ASTSymbolTableBuilder{*ast}; \
+ ASTNodeDataTypeBuilder{*ast}; \
+ \
+ ASTNodeDeclarationToAffectationConverter{*ast}; \
+ ASTNodeTypeCleaner<language::var_declaration>{*ast}; \
+ ASTNodeTypeCleaner<language::fct_declaration>{*ast}; \
+ \
+ ASTNodeExpressionBuilder{*ast}; \
+ ExecutionPolicy exec_policy; \
+ ASTExecutionStack::create(); \
+ ASTCheckpointsInfoTester ast_cp_info_tester{*ast}; \
+ ast->execute(exec_policy); \
+ ASTExecutionStack::destroy(); \
+ ast->m_symbol_table->clearValues(); \
+ \
+ CheckpointResumeRepository::destroy(); \
+ ParallelChecker::destroy(); \
+ ExecutionStatManager::destroy(); \
+ ast->m_symbol_table->clearValues(); \
+ }
+
+#endif // PUGS_HAS_HDF5
+
+// clazy:excludeall=non-pod-global-static
+
+TEST_CASE("checkpointing_Resume_sequential", "[utils/checkpointing]")
+{
+#ifdef PUGS_HAS_HDF5
+
+ auto frobeniusNorm = [](const auto& A) {
+ using A_T = std::decay_t<decltype(A)>;
+ static_assert(is_tiny_matrix_v<A_T>);
+ return std::sqrt(trace(transpose(A) * A));
+ };
+
+ using R1 = TinyVector<1>;
+ using R2 = TinyVector<2>;
+ using R3 = TinyVector<3>;
+
+ using R11 = TinyMatrix<1>;
+ using R22 = TinyMatrix<2>;
+ using R33 = TinyMatrix<3>;
+
+ MeshDataBaseForTests::destroy();
+ GlobalVariableManager::instance().setMeshId(0);
+ GlobalVariableManager::instance().setConnectivityId(0);
+
+ ResumingManager::destroy();
+ ResumingManager::create();
+
+ std::string tmp_dirname;
+ {
+ {
+ if (parallel::rank() == 0) {
+ tmp_dirname = [&]() -> std::string {
+ std::string temp_filename = std::filesystem::temp_directory_path() / "pugs_checkpointing_XXXXXX";
+ return std::string{mkdtemp(&temp_filename[0])};
+ }();
+ }
+ parallel::broadcast(tmp_dirname, 0);
+ }
+ std::filesystem::path path = tmp_dirname;
+ const std::string filename = path / "checkpoint.h5";
+
+ ResumingManager::getInstance().setFilename(filename);
+ }
+
+ const std::string filename = ResumingManager::getInstance().filename();
+
+ std::string data = R"(
+import math;
+import mesh;
+import scheme;
+
+let f:R*R^3 -> R^3, (a, v) -> a * v;
+
+let alpha:R, alpha = 3.2;
+let u1:R^1, u1 = [0.3];
+let u2:R^2, u2 = [0.3, 1.2];
+let u3:R^3, u3 = [1, 2, 3];
+
+let A1:R^1x1, A1 = [[0.7]];
+let A2:R^2x2, A2 = [[1.4, 2.1], [0.6, 3]];
+let A3:R^3x3, A3 = [[1.1, 2.2, 3.3], [0.1, 0.2, 0.3], [1.6, 1.2, 1.4]];
+
+let m2d:mesh, m2d = cartesianMesh(0, [1,1], (10,10));
+
+let b_tuple:(B), b_tuple = (true, false, true);
+let n_tuple:(N), n_tuple = (1, 2, 3, 4);
+let z_tuple:(Z), z_tuple = (1, -2, 3, -4);
+let r_tuple:(R), r_tuple = (1.2, -2.4, 3.1, -4.3);
+let s_tuple:(string), s_tuple = ("foo", "bar");
+
+let r1_tuple:(R^1), r1_tuple = ([1], [2]);
+let r2_tuple:(R^2), r2_tuple = ([1.2, 3], [2.3, 4], [3.2, 1.4]);
+let r3_tuple:(R^3), r3_tuple = ([1.2, 0.2, 3], [2.3, -1, 4], [3.2, 2.1, 1.4]);
+
+let r11_tuple:(R^1x1), r11_tuple = ([[1.3]], [[2.4]]);
+let r22_tuple:(R^2x2), r22_tuple = ([[1.2, 3], [2.3, 4]], [[3.2, 1.4], [1.3, 5.2]]);
+let r33_tuple:(R^3x3), r33_tuple = ([[1.2, 0.2, 3], [2.3, -1, 4], [3.2, 2.1, 1.4]]);
+
+let duals_2d:(mesh), duals_2d = (diamondDual(m2d), medianDual(m2d));
+
+let m1d:mesh, m1d = cartesianMesh([0], [1], 10);
+let dual_1d:mesh, dual_1d = diamondDual(m1d);
+
+let m3d:mesh, m3d = cartesianMesh(0, [1,1,1], (6,6,6));
+let dual_3d:mesh, dual_3d = diamondDual(m3d);
+
+let b:B, b = false;
+let z:Z, z = -2;
+let s:string, s = "foobar";
+
+for(let i:N, i=0; i<3; ++i) {
+ checkpoint();
+
+ s = "foobar_"+i;
+ z += 1;
+ b = not b;
+
+ let g:R -> R^3, x -> [x, 1.2*x, 3];
+ u3 = f(alpha,u3);
+
+ checkpoint();
+}
+)";
+
+ const size_t initial_mesh_id = GlobalVariableManager::instance().getMeshId();
+ const size_t initial_connectivity_id = GlobalVariableManager::instance().getConnectivityId();
+
+ RUN_AST(data);
+
+ GlobalVariableManager::instance().setMeshId(initial_mesh_id);
+ GlobalVariableManager::instance().setConnectivityId(initial_connectivity_id);
+
+ { // Check checkpoint file
+
+ HighFive::File file(ResumingManager::getInstance().filename(), HighFive::File::ReadOnly);
+
+ HighFive::Group checkpoint = file.getGroup("/resuming_checkpoint");
+
+ REQUIRE(checkpoint.getAttribute("id").read<uint64_t>() == 1);
+ REQUIRE(checkpoint.getAttribute("checkpoint_number").read<uint64_t>() == 5);
+ REQUIRE(checkpoint.getAttribute("name").read<std::string>() == "checkpoint_5");
+
+ HighFive::Group symbol_table0 = checkpoint.getGroup("symbol table");
+ REQUIRE(symbol_table0.getAttribute("i").read<uint64_t>() == 2);
+
+ HighFive::Group symbol_table1 = symbol_table0.getGroup("symbol table");
+ REQUIRE(symbol_table1.getAttribute("alpha").read<double>() == 3.2);
+ REQUIRE(l2Norm(symbol_table1.getAttribute("u1").read<R1>() - R1{0.3}) == Catch::Approx(0).margin(1E-12));
+ REQUIRE(l2Norm(symbol_table1.getAttribute("u2").read<R2>() - R2{0.3, 1.2}) == Catch::Approx(0).margin(1E-12));
+ REQUIRE(l2Norm(symbol_table1.getAttribute("u3").read<R3>() - R3{32.768, 65.536, 98.304}) ==
+ Catch::Approx(0).margin(1E-12));
+ REQUIRE(symbol_table1.getAttribute("b").read<bool>() == true);
+ REQUIRE(symbol_table1.getAttribute("z").read<int64_t>() == 1);
+ REQUIRE(symbol_table1.getAttribute("s").read<std::string>() == "foobar_2");
+ REQUIRE(symbol_table1.getAttribute("A1").read<R11>()(0, 0) == Catch::Approx(0.7).margin(1E-12));
+ REQUIRE(frobeniusNorm(symbol_table1.getAttribute("A2").read<R22>() - R22{1.4, 2.1, 0.6, 3}) ==
+ Catch::Approx(0).margin(1E-12));
+ REQUIRE(frobeniusNorm(symbol_table1.getAttribute("A3").read<R33>() -
+ R33{1.1, 2.2, 3.3, 0.1, 0.2, 0.3, 1.6, 1.2, 1.4}) == Catch::Approx(0).margin(1E-12));
+ REQUIRE(symbol_table1.getAttribute("b_tuple").read<std::vector<bool>>() == std::vector<bool>{true, false, true});
+ REQUIRE(symbol_table1.getAttribute("n_tuple").read<std::vector<uint64_t>>() == std::vector<uint64_t>{1, 2, 3, 4});
+ REQUIRE(symbol_table1.getAttribute("z_tuple").read<std::vector<int64_t>>() == std::vector<int64_t>{1, -2, 3, -4});
+ REQUIRE(symbol_table1.getAttribute("r_tuple").read<std::vector<double>>() ==
+ std::vector<double>{1.2, -2.4, 3.1, -4.3});
+ REQUIRE(symbol_table1.getAttribute("s_tuple").read<std::vector<std::string>>() ==
+ std::vector<std::string>{"foo", "bar"});
+
+ REQUIRE(symbol_table1.getAttribute("r1_tuple").read<std::vector<R1>>() == std::vector{R1{1}, R1{2}});
+ REQUIRE(symbol_table1.getAttribute("r2_tuple").read<std::vector<R2>>() ==
+ std::vector{R2{1.2, 3}, R2{2.3, 4}, R2{3.2, 1.4}});
+ REQUIRE(symbol_table1.getAttribute("r3_tuple").read<std::vector<R3>>() ==
+ std::vector{R3{1.2, 0.2, 3}, R3{2.3, -1, 4}, R3{3.2, 2.1, 1.4}});
+
+ REQUIRE(symbol_table1.getAttribute("r11_tuple").read<std::vector<R11>>() == std::vector{R11{1.3}, R11{2.4}});
+ REQUIRE(symbol_table1.getAttribute("r22_tuple").read<std::vector<R22>>() ==
+ std::vector{R22{1.2, 3, 2.3, 4}, R22{3.2, 1.4, 1.3, 5.2}});
+ REQUIRE(symbol_table1.getAttribute("r33_tuple").read<std::vector<R33>>() ==
+ std::vector{R33{1.2, 0.2, 3, 2.3, -1, 4, 3.2, 2.1, 1.4}});
+
+ HighFive::Group embedded1 = symbol_table1.getGroup("embedded");
+
+ HighFive::Group m1d = embedded1.getGroup("m1d");
+ REQUIRE(m1d.getAttribute("type").read<std::string>() == "mesh");
+ REQUIRE(m1d.getAttribute("id").read<uint64_t>() == initial_mesh_id + 3);
+
+ HighFive::Group dual_1d = embedded1.getGroup("dual_1d");
+ REQUIRE(dual_1d.getAttribute("type").read<std::string>() == "mesh");
+ REQUIRE(dual_1d.getAttribute("id").read<uint64_t>() == initial_mesh_id + 4);
+
+ HighFive::Group m2d = embedded1.getGroup("m2d");
+ REQUIRE(m2d.getAttribute("type").read<std::string>() == "mesh");
+ REQUIRE(m2d.getAttribute("id").read<uint64_t>() == initial_mesh_id);
+
+ HighFive::Group duals_2d = embedded1.getGroup("duals_2d");
+ REQUIRE(duals_2d.getAttribute("type").read<std::string>() == "(mesh)");
+ HighFive::Group duals_2d_0 = duals_2d.getGroup("0");
+ REQUIRE(duals_2d_0.getAttribute("type").read<std::string>() == "mesh");
+ REQUIRE(duals_2d_0.getAttribute("id").read<uint64_t>() == initial_mesh_id + 1);
+ HighFive::Group duals_2d_1 = duals_2d.getGroup("1");
+ REQUIRE(duals_2d_1.getAttribute("type").read<std::string>() == "mesh");
+ REQUIRE(duals_2d_1.getAttribute("id").read<uint64_t>() == initial_mesh_id + 2);
+
+ HighFive::Group m3d = embedded1.getGroup("m3d");
+ REQUIRE(m3d.getAttribute("type").read<std::string>() == "mesh");
+ REQUIRE(m3d.getAttribute("id").read<uint64_t>() == initial_mesh_id + 5);
+
+ HighFive::Group dual_3d = embedded1.getGroup("dual_3d");
+ REQUIRE(dual_3d.getAttribute("type").read<std::string>() == "mesh");
+ REQUIRE(dual_3d.getAttribute("id").read<uint64_t>() == initial_mesh_id + 6);
+
+ HighFive::Group singleton = checkpoint.getGroup("singleton");
+ HighFive::Group global_variables = singleton.getGroup("global_variables");
+ REQUIRE(global_variables.getAttribute("connectivity_id").read<uint64_t>() == initial_connectivity_id + 7);
+ REQUIRE(global_variables.getAttribute("mesh_id").read<uint64_t>() == initial_mesh_id + 7);
+ HighFive::Group execution_info = singleton.getGroup("execution_info");
+ REQUIRE(execution_info.getAttribute("run_number").read<uint64_t>() == 1);
+
+ HighFive::Group connectivity = checkpoint.getGroup("connectivity");
+ HighFive::Group connectivity0 = connectivity.getGroup(std::to_string(initial_connectivity_id));
+ REQUIRE(connectivity0.getAttribute("dimension").read<uint64_t>() == 2);
+ REQUIRE(connectivity0.getAttribute("id").read<uint64_t>() == initial_connectivity_id);
+ REQUIRE(connectivity0.getAttribute("type").read<std::string>() == "unstructured");
+
+ HighFive::Group connectivity1 = connectivity.getGroup(std::to_string(initial_connectivity_id + 1));
+ REQUIRE(connectivity1.getAttribute("id").read<uint64_t>() == initial_connectivity_id + 1);
+ REQUIRE(connectivity1.getAttribute("primal_connectivity_id").read<uint64_t>() == initial_connectivity_id);
+ REQUIRE(connectivity1.getAttribute("type").read<std::string>() == "dual_connectivity");
+ REQUIRE(connectivity1.getAttribute("type_of_dual").read<DualMeshType>() == DualMeshType::Diamond);
+
+ HighFive::Group connectivity2 = connectivity.getGroup(std::to_string(initial_connectivity_id + 2));
+ REQUIRE(connectivity2.getAttribute("id").read<uint64_t>() == initial_connectivity_id + 2);
+ REQUIRE(connectivity2.getAttribute("primal_connectivity_id").read<uint64_t>() == initial_connectivity_id);
+ REQUIRE(connectivity2.getAttribute("type").read<std::string>() == "dual_connectivity");
+ REQUIRE(connectivity2.getAttribute("type_of_dual").read<DualMeshType>() == DualMeshType::Median);
+
+ HighFive::Group connectivity3 = connectivity.getGroup(std::to_string(initial_connectivity_id + 3));
+ REQUIRE(connectivity3.getAttribute("dimension").read<uint64_t>() == 1);
+ REQUIRE(connectivity3.getAttribute("id").read<uint64_t>() == initial_connectivity_id + 3);
+ REQUIRE(connectivity3.getAttribute("type").read<std::string>() == "unstructured");
+
+ HighFive::Group connectivity4 = connectivity.getGroup(std::to_string(initial_connectivity_id + 4));
+ REQUIRE(connectivity4.getAttribute("id").read<uint64_t>() == initial_connectivity_id + 4);
+ REQUIRE(connectivity4.getAttribute("primal_connectivity_id").read<uint64_t>() == initial_connectivity_id + 3);
+ REQUIRE(connectivity4.getAttribute("type").read<std::string>() == "dual_connectivity");
+ REQUIRE(connectivity4.getAttribute("type_of_dual").read<DualMeshType>() == DualMeshType::Dual1D);
+
+ HighFive::Group connectivity5 = connectivity.getGroup(std::to_string(initial_connectivity_id + 5));
+ REQUIRE(connectivity5.getAttribute("dimension").read<uint64_t>() == 3);
+ REQUIRE(connectivity5.getAttribute("id").read<uint64_t>() == initial_connectivity_id + 5);
+ REQUIRE(connectivity5.getAttribute("type").read<std::string>() == "unstructured");
+
+ HighFive::Group connectivity6 = connectivity.getGroup(std::to_string(initial_connectivity_id + 6));
+ REQUIRE(connectivity6.getAttribute("id").read<uint64_t>() == initial_connectivity_id + 6);
+ REQUIRE(connectivity6.getAttribute("primal_connectivity_id").read<uint64_t>() == initial_connectivity_id + 5);
+ REQUIRE(connectivity6.getAttribute("type").read<std::string>() == "dual_connectivity");
+ REQUIRE(connectivity6.getAttribute("type_of_dual").read<DualMeshType>() == DualMeshType::Diamond);
+
+ HighFive::Group mesh = checkpoint.getGroup("mesh");
+ HighFive::Group mesh0 = mesh.getGroup(std::to_string(initial_mesh_id));
+ REQUIRE(mesh0.getAttribute("connectivity").read<uint64_t>() == initial_connectivity_id);
+ REQUIRE(mesh0.getAttribute("dimension").read<uint64_t>() == 2);
+ REQUIRE(mesh0.getAttribute("id").read<uint64_t>() == initial_mesh_id);
+ REQUIRE(mesh0.getAttribute("type").read<std::string>() == "polygonal");
+
+ HighFive::Group mesh1 = mesh.getGroup(std::to_string(initial_mesh_id + 1));
+ REQUIRE(mesh1.getAttribute("id").read<uint64_t>() == initial_mesh_id + 1);
+ REQUIRE(mesh1.getAttribute("primal_mesh_id").read<uint64_t>() == initial_mesh_id);
+ REQUIRE(mesh1.getAttribute("type").read<std::string>() == "dual_mesh");
+ REQUIRE(mesh1.getAttribute("type_of_dual").read<DualMeshType>() == DualMeshType::Diamond);
+
+ HighFive::Group mesh2 = mesh.getGroup(std::to_string(initial_mesh_id + 2));
+ REQUIRE(mesh2.getAttribute("id").read<uint64_t>() == initial_mesh_id + 2);
+ REQUIRE(mesh2.getAttribute("primal_mesh_id").read<uint64_t>() == initial_mesh_id);
+ REQUIRE(mesh2.getAttribute("type").read<std::string>() == "dual_mesh");
+ REQUIRE(mesh2.getAttribute("type_of_dual").read<DualMeshType>() == DualMeshType::Median);
+
+ HighFive::Group mesh3 = mesh.getGroup(std::to_string(initial_mesh_id + 3));
+ REQUIRE(mesh3.getAttribute("connectivity").read<uint64_t>() == initial_connectivity_id + 3);
+ REQUIRE(mesh3.getAttribute("dimension").read<uint64_t>() == 1);
+ REQUIRE(mesh3.getAttribute("id").read<uint64_t>() == initial_mesh_id + 3);
+ REQUIRE(mesh3.getAttribute("type").read<std::string>() == "polygonal");
+
+ HighFive::Group mesh4 = mesh.getGroup(std::to_string(initial_mesh_id + 4));
+ REQUIRE(mesh4.getAttribute("id").read<uint64_t>() == initial_mesh_id + 4);
+ REQUIRE(mesh4.getAttribute("primal_mesh_id").read<uint64_t>() == initial_mesh_id + 3);
+ REQUIRE(mesh4.getAttribute("type").read<std::string>() == "dual_mesh");
+ REQUIRE(mesh4.getAttribute("type_of_dual").read<DualMeshType>() == DualMeshType::Dual1D);
+
+ HighFive::Group mesh5 = mesh.getGroup(std::to_string(initial_mesh_id + 5));
+ REQUIRE(mesh5.getAttribute("connectivity").read<uint64_t>() == initial_connectivity_id + 5);
+ REQUIRE(mesh5.getAttribute("dimension").read<uint64_t>() == 3);
+ REQUIRE(mesh5.getAttribute("id").read<uint64_t>() == initial_mesh_id + 5);
+ REQUIRE(mesh5.getAttribute("type").read<std::string>() == "polygonal");
+
+ HighFive::Group mesh6 = mesh.getGroup(std::to_string(initial_mesh_id + 6));
+ REQUIRE(mesh6.getAttribute("id").read<uint64_t>() == initial_mesh_id + 6);
+ REQUIRE(mesh6.getAttribute("primal_mesh_id").read<uint64_t>() == initial_mesh_id + 5);
+ REQUIRE(mesh6.getAttribute("type").read<std::string>() == "dual_mesh");
+ REQUIRE(mesh6.getAttribute("type_of_dual").read<DualMeshType>() == DualMeshType::Diamond);
+
+ HighFive::Group functions = checkpoint.getGroup("functions");
+ HighFive::Group f = functions.getGroup("f");
+ REQUIRE(f.getAttribute("id").read<uint64_t>() == 0);
+ REQUIRE(f.getAttribute("symbol_table_id").read<uint64_t>() == 1);
+ HighFive::Group g = functions.getGroup("g");
+ REQUIRE(g.getAttribute("id").read<uint64_t>() == 1);
+ REQUIRE(g.getAttribute("symbol_table_id").read<uint64_t>() == 0);
+ }
+
+ parallel::barrier();
+
+ setResumeFrom(filename, 3);
+
+ parallel::barrier();
+
+ { // Check checkpoint file
+
+ HighFive::File file(ResumingManager::getInstance().filename(), HighFive::File::ReadOnly);
+
+ HighFive::Group checkpoint = file.getGroup("/resuming_checkpoint");
+
+ REQUIRE(checkpoint.getAttribute("id").read<uint64_t>() == 1);
+ REQUIRE(checkpoint.getAttribute("checkpoint_number").read<uint64_t>() == 3);
+ REQUIRE(checkpoint.getAttribute("name").read<std::string>() == "checkpoint_3");
+
+ HighFive::Group symbol_table0 = checkpoint.getGroup("symbol table");
+ REQUIRE(symbol_table0.getAttribute("i").read<uint64_t>() == 1);
+
+ HighFive::Group symbol_table1 = symbol_table0.getGroup("symbol table");
+ REQUIRE(symbol_table1.getAttribute("alpha").read<double>() == 3.2);
+ REQUIRE(l2Norm(symbol_table1.getAttribute("u1").read<R1>() - R1{0.3}) == Catch::Approx(0).margin(1E-12));
+ REQUIRE(l2Norm(symbol_table1.getAttribute("u2").read<R2>() - R2{0.3, 1.2}) == Catch::Approx(0).margin(1E-12));
+ REQUIRE(l2Norm(symbol_table1.getAttribute("u3").read<R3>() - R3{10.24, 20.48, 30.72}) ==
+ Catch::Approx(0).margin(1E-12));
+ REQUIRE(symbol_table1.getAttribute("b").read<bool>() == false);
+ REQUIRE(symbol_table1.getAttribute("z").read<int64_t>() == 0);
+ REQUIRE(symbol_table1.getAttribute("s").read<std::string>() == "foobar_1");
+ REQUIRE(symbol_table1.getAttribute("A1").read<R11>()(0, 0) == Catch::Approx(0.7).margin(1E-12));
+ REQUIRE(frobeniusNorm(symbol_table1.getAttribute("A2").read<R22>() - R22{1.4, 2.1, 0.6, 3}) ==
+ Catch::Approx(0).margin(1E-12));
+ REQUIRE(frobeniusNorm(symbol_table1.getAttribute("A3").read<R33>() -
+ R33{1.1, 2.2, 3.3, 0.1, 0.2, 0.3, 1.6, 1.2, 1.4}) == Catch::Approx(0).margin(1E-12));
+
+ REQUIRE(symbol_table1.getAttribute("b_tuple").read<std::vector<bool>>() == std::vector<bool>{true, false, true});
+ REQUIRE(symbol_table1.getAttribute("n_tuple").read<std::vector<uint64_t>>() == std::vector<uint64_t>{1, 2, 3, 4});
+ REQUIRE(symbol_table1.getAttribute("z_tuple").read<std::vector<int64_t>>() == std::vector<int64_t>{1, -2, 3, -4});
+ REQUIRE(symbol_table1.getAttribute("r_tuple").read<std::vector<double>>() ==
+ std::vector<double>{1.2, -2.4, 3.1, -4.3});
+ REQUIRE(symbol_table1.getAttribute("s_tuple").read<std::vector<std::string>>() ==
+ std::vector<std::string>{"foo", "bar"});
+
+ REQUIRE(symbol_table1.getAttribute("r1_tuple").read<std::vector<R1>>() == std::vector{R1{1}, R1{2}});
+ REQUIRE(symbol_table1.getAttribute("r2_tuple").read<std::vector<R2>>() ==
+ std::vector{R2{1.2, 3}, R2{2.3, 4}, R2{3.2, 1.4}});
+ REQUIRE(symbol_table1.getAttribute("r3_tuple").read<std::vector<R3>>() ==
+ std::vector{R3{1.2, 0.2, 3}, R3{2.3, -1, 4}, R3{3.2, 2.1, 1.4}});
+
+ REQUIRE(symbol_table1.getAttribute("r11_tuple").read<std::vector<R11>>() == std::vector{R11{1.3}, R11{2.4}});
+ REQUIRE(symbol_table1.getAttribute("r22_tuple").read<std::vector<R22>>() ==
+ std::vector{R22{1.2, 3, 2.3, 4}, R22{3.2, 1.4, 1.3, 5.2}});
+ REQUIRE(symbol_table1.getAttribute("r33_tuple").read<std::vector<R33>>() ==
+ std::vector{R33{1.2, 0.2, 3, 2.3, -1, 4, 3.2, 2.1, 1.4}});
+
+ HighFive::Group embedded1 = symbol_table1.getGroup("embedded");
+
+ HighFive::Group m2d = embedded1.getGroup("m2d");
+ REQUIRE(m2d.getAttribute("type").read<std::string>() == "mesh");
+ REQUIRE(m2d.getAttribute("id").read<uint64_t>() == initial_mesh_id);
+
+ HighFive::Group duals_2d = embedded1.getGroup("duals_2d");
+ REQUIRE(duals_2d.getAttribute("type").read<std::string>() == "(mesh)");
+ HighFive::Group duals_2d_0 = duals_2d.getGroup("0");
+ REQUIRE(duals_2d_0.getAttribute("type").read<std::string>() == "mesh");
+ REQUIRE(duals_2d_0.getAttribute("id").read<uint64_t>() == initial_mesh_id + 1);
+ HighFive::Group duals_2d_1 = duals_2d.getGroup("1");
+ REQUIRE(duals_2d_1.getAttribute("type").read<std::string>() == "mesh");
+ REQUIRE(duals_2d_1.getAttribute("id").read<uint64_t>() == initial_mesh_id + 2);
+
+ HighFive::Group m3d = embedded1.getGroup("m3d");
+ REQUIRE(m3d.getAttribute("type").read<std::string>() == "mesh");
+ REQUIRE(m3d.getAttribute("id").read<uint64_t>() == initial_mesh_id + 5);
+
+ HighFive::Group dual_3d = embedded1.getGroup("dual_3d");
+ REQUIRE(dual_3d.getAttribute("type").read<std::string>() == "mesh");
+ REQUIRE(dual_3d.getAttribute("id").read<uint64_t>() == initial_mesh_id + 6);
+
+ HighFive::Group singleton = checkpoint.getGroup("singleton");
+ HighFive::Group global_variables = singleton.getGroup("global_variables");
+ REQUIRE(global_variables.getAttribute("connectivity_id").read<uint64_t>() == initial_connectivity_id + 7);
+ REQUIRE(global_variables.getAttribute("mesh_id").read<uint64_t>() == initial_mesh_id + 7);
+ HighFive::Group execution_info = singleton.getGroup("execution_info");
+ REQUIRE(execution_info.getAttribute("run_number").read<uint64_t>() == 1);
+
+ HighFive::Group connectivity = checkpoint.getGroup("connectivity");
+ HighFive::Group connectivity0 = connectivity.getGroup(std::to_string(initial_connectivity_id));
+ REQUIRE(connectivity0.getAttribute("dimension").read<uint64_t>() == 2);
+ REQUIRE(connectivity0.getAttribute("id").read<uint64_t>() == initial_connectivity_id);
+ REQUIRE(connectivity0.getAttribute("type").read<std::string>() == "unstructured");
+
+ HighFive::Group connectivity1 = connectivity.getGroup(std::to_string(initial_connectivity_id + 1));
+ REQUIRE(connectivity1.getAttribute("id").read<uint64_t>() == initial_connectivity_id + 1);
+ REQUIRE(connectivity1.getAttribute("primal_connectivity_id").read<uint64_t>() == initial_connectivity_id);
+ REQUIRE(connectivity1.getAttribute("type").read<std::string>() == "dual_connectivity");
+ REQUIRE(connectivity1.getAttribute("type_of_dual").read<DualMeshType>() == DualMeshType::Diamond);
+
+ HighFive::Group connectivity2 = connectivity.getGroup(std::to_string(initial_connectivity_id + 2));
+ REQUIRE(connectivity2.getAttribute("id").read<uint64_t>() == initial_connectivity_id + 2);
+ REQUIRE(connectivity2.getAttribute("primal_connectivity_id").read<uint64_t>() == initial_connectivity_id);
+ REQUIRE(connectivity2.getAttribute("type").read<std::string>() == "dual_connectivity");
+ REQUIRE(connectivity2.getAttribute("type_of_dual").read<DualMeshType>() == DualMeshType::Median);
+
+ HighFive::Group connectivity3 = connectivity.getGroup(std::to_string(initial_connectivity_id + 3));
+ REQUIRE(connectivity3.getAttribute("dimension").read<uint64_t>() == 1);
+ REQUIRE(connectivity3.getAttribute("id").read<uint64_t>() == initial_connectivity_id + 3);
+ REQUIRE(connectivity3.getAttribute("type").read<std::string>() == "unstructured");
+
+ HighFive::Group connectivity4 = connectivity.getGroup(std::to_string(initial_connectivity_id + 4));
+ REQUIRE(connectivity4.getAttribute("id").read<uint64_t>() == initial_connectivity_id + 4);
+ REQUIRE(connectivity4.getAttribute("primal_connectivity_id").read<uint64_t>() == initial_connectivity_id + 3);
+ REQUIRE(connectivity4.getAttribute("type").read<std::string>() == "dual_connectivity");
+ REQUIRE(connectivity4.getAttribute("type_of_dual").read<DualMeshType>() == DualMeshType::Dual1D);
+
+ HighFive::Group connectivity5 = connectivity.getGroup(std::to_string(initial_connectivity_id + 5));
+ REQUIRE(connectivity5.getAttribute("dimension").read<uint64_t>() == 3);
+ REQUIRE(connectivity5.getAttribute("id").read<uint64_t>() == initial_connectivity_id + 5);
+ REQUIRE(connectivity5.getAttribute("type").read<std::string>() == "unstructured");
+
+ HighFive::Group connectivity6 = connectivity.getGroup(std::to_string(initial_connectivity_id + 6));
+ REQUIRE(connectivity6.getAttribute("id").read<uint64_t>() == initial_connectivity_id + 6);
+ REQUIRE(connectivity6.getAttribute("primal_connectivity_id").read<uint64_t>() == initial_connectivity_id + 5);
+ REQUIRE(connectivity6.getAttribute("type").read<std::string>() == "dual_connectivity");
+ REQUIRE(connectivity6.getAttribute("type_of_dual").read<DualMeshType>() == DualMeshType::Diamond);
+
+ HighFive::Group mesh = checkpoint.getGroup("mesh");
+ HighFive::Group mesh0 = mesh.getGroup(std::to_string(initial_mesh_id));
+ REQUIRE(mesh0.getAttribute("connectivity").read<uint64_t>() == initial_connectivity_id);
+ REQUIRE(mesh0.getAttribute("dimension").read<uint64_t>() == 2);
+ REQUIRE(mesh0.getAttribute("id").read<uint64_t>() == initial_mesh_id);
+ REQUIRE(mesh0.getAttribute("type").read<std::string>() == "polygonal");
+
+ HighFive::Group mesh1 = mesh.getGroup(std::to_string(initial_mesh_id + 1));
+ REQUIRE(mesh1.getAttribute("id").read<uint64_t>() == initial_mesh_id + 1);
+ REQUIRE(mesh1.getAttribute("primal_mesh_id").read<uint64_t>() == initial_mesh_id);
+ REQUIRE(mesh1.getAttribute("type").read<std::string>() == "dual_mesh");
+ REQUIRE(mesh1.getAttribute("type_of_dual").read<DualMeshType>() == DualMeshType::Diamond);
+
+ HighFive::Group mesh2 = mesh.getGroup(std::to_string(initial_mesh_id + 2));
+ REQUIRE(mesh2.getAttribute("id").read<uint64_t>() == initial_mesh_id + 2);
+ REQUIRE(mesh2.getAttribute("primal_mesh_id").read<uint64_t>() == initial_mesh_id);
+ REQUIRE(mesh2.getAttribute("type").read<std::string>() == "dual_mesh");
+ REQUIRE(mesh2.getAttribute("type_of_dual").read<DualMeshType>() == DualMeshType::Median);
+
+ HighFive::Group mesh3 = mesh.getGroup(std::to_string(initial_mesh_id + 3));
+ REQUIRE(mesh3.getAttribute("connectivity").read<uint64_t>() == initial_connectivity_id + 3);
+ REQUIRE(mesh3.getAttribute("dimension").read<uint64_t>() == 1);
+ REQUIRE(mesh3.getAttribute("id").read<uint64_t>() == initial_mesh_id + 3);
+ REQUIRE(mesh3.getAttribute("type").read<std::string>() == "polygonal");
+
+ HighFive::Group mesh4 = mesh.getGroup(std::to_string(initial_mesh_id + 4));
+ REQUIRE(mesh4.getAttribute("id").read<uint64_t>() == initial_mesh_id + 4);
+ REQUIRE(mesh4.getAttribute("primal_mesh_id").read<uint64_t>() == initial_mesh_id + 3);
+ REQUIRE(mesh4.getAttribute("type").read<std::string>() == "dual_mesh");
+ REQUIRE(mesh4.getAttribute("type_of_dual").read<DualMeshType>() == DualMeshType::Dual1D);
+
+ HighFive::Group mesh5 = mesh.getGroup(std::to_string(initial_mesh_id + 5));
+ REQUIRE(mesh5.getAttribute("connectivity").read<uint64_t>() == initial_connectivity_id + 5);
+ REQUIRE(mesh5.getAttribute("dimension").read<uint64_t>() == 3);
+ REQUIRE(mesh5.getAttribute("id").read<uint64_t>() == initial_mesh_id + 5);
+ REQUIRE(mesh5.getAttribute("type").read<std::string>() == "polygonal");
+
+ HighFive::Group mesh6 = mesh.getGroup(std::to_string(initial_mesh_id + 6));
+ REQUIRE(mesh6.getAttribute("id").read<uint64_t>() == initial_mesh_id + 6);
+ REQUIRE(mesh6.getAttribute("primal_mesh_id").read<uint64_t>() == initial_mesh_id + 5);
+ REQUIRE(mesh6.getAttribute("type").read<std::string>() == "dual_mesh");
+ REQUIRE(mesh6.getAttribute("type_of_dual").read<DualMeshType>() == DualMeshType::Diamond);
+
+ HighFive::Group functions = checkpoint.getGroup("functions");
+ HighFive::Group f = functions.getGroup("f");
+ REQUIRE(f.getAttribute("id").read<uint64_t>() == 0);
+ REQUIRE(f.getAttribute("symbol_table_id").read<uint64_t>() == 1);
+ HighFive::Group g = functions.getGroup("g");
+ REQUIRE(g.getAttribute("id").read<uint64_t>() == 1);
+ REQUIRE(g.getAttribute("symbol_table_id").read<uint64_t>() == 0);
+ }
+
+ ResumingManager::destroy();
+ ResumingManager::create();
+ ResumingManager::getInstance().setFilename(filename);
+ ResumingManager::getInstance().setIsResuming(true);
+ GlobalVariableManager::instance().setMeshId(initial_mesh_id);
+ GlobalVariableManager::instance().setConnectivityId(initial_connectivity_id);
+
+ RUN_AST(data);
+
+ { // Check checkpoint file
+
+ HighFive::File file(ResumingManager::getInstance().filename(), HighFive::File::ReadOnly);
+
+ HighFive::Group checkpoint = file.getGroup("/resuming_checkpoint");
+
+ REQUIRE(checkpoint.getAttribute("id").read<uint64_t>() == 1);
+ REQUIRE(checkpoint.getAttribute("checkpoint_number").read<uint64_t>() == 5);
+ REQUIRE(checkpoint.getAttribute("name").read<std::string>() == "checkpoint_5");
+
+ HighFive::Group symbol_table0 = checkpoint.getGroup("symbol table");
+ REQUIRE(symbol_table0.getAttribute("i").read<uint64_t>() == 2);
+
+ HighFive::Group symbol_table1 = symbol_table0.getGroup("symbol table");
+ REQUIRE(symbol_table1.getAttribute("alpha").read<double>() == 3.2);
+ REQUIRE(l2Norm(symbol_table1.getAttribute("u1").read<R1>() - R1{0.3}) == Catch::Approx(0).margin(1E-12));
+ REQUIRE(l2Norm(symbol_table1.getAttribute("u2").read<R2>() - R2{0.3, 1.2}) == Catch::Approx(0).margin(1E-12));
+ REQUIRE(l2Norm(symbol_table1.getAttribute("u3").read<R3>() - R3{32.768, 65.536, 98.304}) ==
+ Catch::Approx(0).margin(1E-12));
+ REQUIRE(symbol_table1.getAttribute("b").read<bool>() == true);
+ REQUIRE(symbol_table1.getAttribute("z").read<int64_t>() == 1);
+ REQUIRE(symbol_table1.getAttribute("s").read<std::string>() == "foobar_2");
+ REQUIRE(symbol_table1.getAttribute("A1").read<R11>()(0, 0) == Catch::Approx(0.7).margin(1E-12));
+ REQUIRE(frobeniusNorm(symbol_table1.getAttribute("A2").read<R22>() - R22{1.4, 2.1, 0.6, 3}) ==
+ Catch::Approx(0).margin(1E-12));
+ REQUIRE(frobeniusNorm(symbol_table1.getAttribute("A3").read<R33>() -
+ R33{1.1, 2.2, 3.3, 0.1, 0.2, 0.3, 1.6, 1.2, 1.4}) == Catch::Approx(0).margin(1E-12));
+
+ REQUIRE(symbol_table1.getAttribute("b_tuple").read<std::vector<bool>>() == std::vector<bool>{true, false, true});
+ REQUIRE(symbol_table1.getAttribute("n_tuple").read<std::vector<uint64_t>>() == std::vector<uint64_t>{1, 2, 3, 4});
+ REQUIRE(symbol_table1.getAttribute("z_tuple").read<std::vector<int64_t>>() == std::vector<int64_t>{1, -2, 3, -4});
+ REQUIRE(symbol_table1.getAttribute("r_tuple").read<std::vector<double>>() ==
+ std::vector<double>{1.2, -2.4, 3.1, -4.3});
+ REQUIRE(symbol_table1.getAttribute("s_tuple").read<std::vector<std::string>>() ==
+ std::vector<std::string>{"foo", "bar"});
+
+ REQUIRE(symbol_table1.getAttribute("r1_tuple").read<std::vector<R1>>() == std::vector{R1{1}, R1{2}});
+ REQUIRE(symbol_table1.getAttribute("r2_tuple").read<std::vector<R2>>() ==
+ std::vector{R2{1.2, 3}, R2{2.3, 4}, R2{3.2, 1.4}});
+ REQUIRE(symbol_table1.getAttribute("r3_tuple").read<std::vector<R3>>() ==
+ std::vector{R3{1.2, 0.2, 3}, R3{2.3, -1, 4}, R3{3.2, 2.1, 1.4}});
+
+ REQUIRE(symbol_table1.getAttribute("r11_tuple").read<std::vector<R11>>() == std::vector{R11{1.3}, R11{2.4}});
+ REQUIRE(symbol_table1.getAttribute("r22_tuple").read<std::vector<R22>>() ==
+ std::vector{R22{1.2, 3, 2.3, 4}, R22{3.2, 1.4, 1.3, 5.2}});
+ REQUIRE(symbol_table1.getAttribute("r33_tuple").read<std::vector<R33>>() ==
+ std::vector{R33{1.2, 0.2, 3, 2.3, -1, 4, 3.2, 2.1, 1.4}});
+
+ HighFive::Group embedded1 = symbol_table1.getGroup("embedded");
+
+ HighFive::Group m2d = embedded1.getGroup("m2d");
+ REQUIRE(m2d.getAttribute("type").read<std::string>() == "mesh");
+ REQUIRE(m2d.getAttribute("id").read<uint64_t>() == initial_mesh_id);
+
+ HighFive::Group duals_2d = embedded1.getGroup("duals_2d");
+ REQUIRE(duals_2d.getAttribute("type").read<std::string>() == "(mesh)");
+ HighFive::Group duals_2d_0 = duals_2d.getGroup("0");
+ REQUIRE(duals_2d_0.getAttribute("type").read<std::string>() == "mesh");
+ REQUIRE(duals_2d_0.getAttribute("id").read<uint64_t>() == initial_mesh_id + 1);
+ HighFive::Group duals_2d_1 = duals_2d.getGroup("1");
+ REQUIRE(duals_2d_1.getAttribute("type").read<std::string>() == "mesh");
+ REQUIRE(duals_2d_1.getAttribute("id").read<uint64_t>() == initial_mesh_id + 2);
+
+ HighFive::Group m3d = embedded1.getGroup("m3d");
+ REQUIRE(m3d.getAttribute("type").read<std::string>() == "mesh");
+ REQUIRE(m3d.getAttribute("id").read<uint64_t>() == initial_mesh_id + 5);
+
+ HighFive::Group dual_3d = embedded1.getGroup("dual_3d");
+ REQUIRE(dual_3d.getAttribute("type").read<std::string>() == "mesh");
+ REQUIRE(dual_3d.getAttribute("id").read<uint64_t>() == initial_mesh_id + 6);
+
+ HighFive::Group singleton = checkpoint.getGroup("singleton");
+ HighFive::Group global_variables = singleton.getGroup("global_variables");
+ REQUIRE(global_variables.getAttribute("connectivity_id").read<uint64_t>() == initial_connectivity_id + 7);
+ REQUIRE(global_variables.getAttribute("mesh_id").read<uint64_t>() == initial_mesh_id + 7);
+ HighFive::Group execution_info = singleton.getGroup("execution_info");
+ REQUIRE(execution_info.getAttribute("run_number").read<uint64_t>() == 2);
+
+ HighFive::Group connectivity = checkpoint.getGroup("connectivity");
+ HighFive::Group connectivity0 = connectivity.getGroup(std::to_string(initial_connectivity_id));
+ REQUIRE(connectivity0.getAttribute("dimension").read<uint64_t>() == 2);
+ REQUIRE(connectivity0.getAttribute("id").read<uint64_t>() == initial_connectivity_id);
+ REQUIRE(connectivity0.getAttribute("type").read<std::string>() == "unstructured");
+
+ HighFive::Group connectivity1 = connectivity.getGroup(std::to_string(initial_connectivity_id + 1));
+ REQUIRE(connectivity1.getAttribute("id").read<uint64_t>() == initial_connectivity_id + 1);
+ REQUIRE(connectivity1.getAttribute("primal_connectivity_id").read<uint64_t>() == initial_connectivity_id);
+ REQUIRE(connectivity1.getAttribute("type").read<std::string>() == "dual_connectivity");
+ REQUIRE(connectivity1.getAttribute("type_of_dual").read<DualMeshType>() == DualMeshType::Diamond);
+
+ HighFive::Group connectivity2 = connectivity.getGroup(std::to_string(initial_connectivity_id + 2));
+ REQUIRE(connectivity2.getAttribute("id").read<uint64_t>() == initial_connectivity_id + 2);
+ REQUIRE(connectivity2.getAttribute("primal_connectivity_id").read<uint64_t>() == initial_connectivity_id);
+ REQUIRE(connectivity2.getAttribute("type").read<std::string>() == "dual_connectivity");
+ REQUIRE(connectivity2.getAttribute("type_of_dual").read<DualMeshType>() == DualMeshType::Median);
+
+ HighFive::Group connectivity3 = connectivity.getGroup(std::to_string(initial_connectivity_id + 3));
+ REQUIRE(connectivity3.getAttribute("dimension").read<uint64_t>() == 1);
+ REQUIRE(connectivity3.getAttribute("id").read<uint64_t>() == initial_connectivity_id + 3);
+ REQUIRE(connectivity3.getAttribute("type").read<std::string>() == "unstructured");
+
+ HighFive::Group connectivity4 = connectivity.getGroup(std::to_string(initial_connectivity_id + 4));
+ REQUIRE(connectivity4.getAttribute("id").read<uint64_t>() == initial_connectivity_id + 4);
+ REQUIRE(connectivity4.getAttribute("primal_connectivity_id").read<uint64_t>() == initial_connectivity_id + 3);
+ REQUIRE(connectivity4.getAttribute("type").read<std::string>() == "dual_connectivity");
+ REQUIRE(connectivity4.getAttribute("type_of_dual").read<DualMeshType>() == DualMeshType::Dual1D);
+
+ HighFive::Group connectivity5 = connectivity.getGroup(std::to_string(initial_connectivity_id + 5));
+ REQUIRE(connectivity5.getAttribute("dimension").read<uint64_t>() == 3);
+ REQUIRE(connectivity5.getAttribute("id").read<uint64_t>() == initial_connectivity_id + 5);
+ REQUIRE(connectivity5.getAttribute("type").read<std::string>() == "unstructured");
+
+ HighFive::Group connectivity6 = connectivity.getGroup(std::to_string(initial_connectivity_id + 6));
+ REQUIRE(connectivity6.getAttribute("id").read<uint64_t>() == initial_connectivity_id + 6);
+ REQUIRE(connectivity6.getAttribute("primal_connectivity_id").read<uint64_t>() == initial_connectivity_id + 5);
+ REQUIRE(connectivity6.getAttribute("type").read<std::string>() == "dual_connectivity");
+ REQUIRE(connectivity6.getAttribute("type_of_dual").read<DualMeshType>() == DualMeshType::Diamond);
+
+ HighFive::Group mesh = checkpoint.getGroup("mesh");
+ HighFive::Group mesh0 = mesh.getGroup(std::to_string(initial_mesh_id));
+ REQUIRE(mesh0.getAttribute("connectivity").read<uint64_t>() == initial_connectivity_id);
+ REQUIRE(mesh0.getAttribute("dimension").read<uint64_t>() == 2);
+ REQUIRE(mesh0.getAttribute("id").read<uint64_t>() == initial_mesh_id);
+ REQUIRE(mesh0.getAttribute("type").read<std::string>() == "polygonal");
+
+ HighFive::Group mesh1 = mesh.getGroup(std::to_string(initial_mesh_id + 1));
+ REQUIRE(mesh1.getAttribute("id").read<uint64_t>() == initial_mesh_id + 1);
+ REQUIRE(mesh1.getAttribute("primal_mesh_id").read<uint64_t>() == initial_mesh_id);
+ REQUIRE(mesh1.getAttribute("type").read<std::string>() == "dual_mesh");
+ REQUIRE(mesh1.getAttribute("type_of_dual").read<DualMeshType>() == DualMeshType::Diamond);
+
+ HighFive::Group mesh2 = mesh.getGroup(std::to_string(initial_mesh_id + 2));
+ REQUIRE(mesh2.getAttribute("id").read<uint64_t>() == initial_mesh_id + 2);
+ REQUIRE(mesh2.getAttribute("primal_mesh_id").read<uint64_t>() == initial_mesh_id);
+ REQUIRE(mesh2.getAttribute("type").read<std::string>() == "dual_mesh");
+ REQUIRE(mesh2.getAttribute("type_of_dual").read<DualMeshType>() == DualMeshType::Median);
+
+ HighFive::Group mesh3 = mesh.getGroup(std::to_string(initial_mesh_id + 3));
+ REQUIRE(mesh3.getAttribute("connectivity").read<uint64_t>() == initial_connectivity_id + 3);
+ REQUIRE(mesh3.getAttribute("dimension").read<uint64_t>() == 1);
+ REQUIRE(mesh3.getAttribute("id").read<uint64_t>() == initial_mesh_id + 3);
+ REQUIRE(mesh3.getAttribute("type").read<std::string>() == "polygonal");
+
+ HighFive::Group mesh4 = mesh.getGroup(std::to_string(initial_mesh_id + 4));
+ REQUIRE(mesh4.getAttribute("id").read<uint64_t>() == initial_mesh_id + 4);
+ REQUIRE(mesh4.getAttribute("primal_mesh_id").read<uint64_t>() == initial_mesh_id + 3);
+ REQUIRE(mesh4.getAttribute("type").read<std::string>() == "dual_mesh");
+ REQUIRE(mesh4.getAttribute("type_of_dual").read<DualMeshType>() == DualMeshType::Dual1D);
+
+ HighFive::Group mesh5 = mesh.getGroup(std::to_string(initial_mesh_id + 5));
+ REQUIRE(mesh5.getAttribute("connectivity").read<uint64_t>() == initial_connectivity_id + 5);
+ REQUIRE(mesh5.getAttribute("dimension").read<uint64_t>() == 3);
+ REQUIRE(mesh5.getAttribute("id").read<uint64_t>() == initial_mesh_id + 5);
+ REQUIRE(mesh5.getAttribute("type").read<std::string>() == "polygonal");
+
+ HighFive::Group mesh6 = mesh.getGroup(std::to_string(initial_mesh_id + 6));
+ REQUIRE(mesh6.getAttribute("id").read<uint64_t>() == initial_mesh_id + 6);
+ REQUIRE(mesh6.getAttribute("primal_mesh_id").read<uint64_t>() == initial_mesh_id + 5);
+ REQUIRE(mesh6.getAttribute("type").read<std::string>() == "dual_mesh");
+ REQUIRE(mesh6.getAttribute("type_of_dual").read<DualMeshType>() == DualMeshType::Diamond);
+
+ HighFive::Group functions = checkpoint.getGroup("functions");
+ HighFive::Group f = functions.getGroup("f");
+ REQUIRE(f.getAttribute("id").read<uint64_t>() == 0);
+ REQUIRE(f.getAttribute("symbol_table_id").read<uint64_t>() == 1);
+ HighFive::Group g = functions.getGroup("g");
+ REQUIRE(g.getAttribute("id").read<uint64_t>() == 1);
+ REQUIRE(g.getAttribute("symbol_table_id").read<uint64_t>() == 0);
+ }
+
+ parallel::barrier();
+ if (parallel::rank() == 0) {
+ std::filesystem::remove_all(std::filesystem::path{tmp_dirname});
+ }
+
+ // Revert to default value
+ ResumingManager::getInstance().setFilename("checkpoint.h5");
+ MeshDataBaseForTests::create();
+
+#else // PUGS_HAS_HDF5
+ REQUIRE_THROWS_WITH(resume(), "error: checkpoint/resume mechanism requires HDF5");
+#endif // PUGS_HAS_HDF5
+}