From 5e5fba1e8cf5a28875d6e699d86844fe3a8f2f2e Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?St=C3=A9phane=20Del=20Pino?= <stephane.delpino44@gmail.com>
Date: Tue, 22 Oct 2024 11:10:54 +0200
Subject: [PATCH] Deactivate HDF5 compression
---
src/utils/Stop.cpp | 10 +++++-----
src/utils/checkpointing/WriteArray.hpp | 6 +++---
src/utils/checkpointing/WriteTable.hpp | 6 +++---
3 files changed, 11 insertions(+), 11 deletions(-)
diff --git a/src/utils/Stop.cpp b/src/utils/Stop.cpp
index 61e4b2ad0..c789beb3a 100644
--- a/src/utils/Stop.cpp
+++ b/src/utils/Stop.cpp
@@ -14,7 +14,7 @@
bool
stop()
{
- bool must_stop = false;
+ bool stop = false;
if (parallel::rank() == 0) {
std::filesystem::path stop_file("stop");
@@ -26,7 +26,7 @@ stop()
std::filesystem::last_write_time(stop_file))
.count();
- must_stop = elapse_time > stop_file_age;
+ stop = elapse_time > stop_file_age;
}
#ifdef PUGS_HAS_SLURM
@@ -36,7 +36,7 @@ stop()
int slurm_job_id = std::atoi(env);
if (slurm_get_rem_time(slurm_job_id) < 150) {
- must_stop = true;
+ stop = true;
}
slurm_fini();
@@ -44,7 +44,7 @@ stop()
#endif // PUGS_HAS_SLURM
}
- parallel::broadcast(must_stop, 0);
+ parallel::broadcast(stop, 0);
- return must_stop;
+ return stop;
}
diff --git a/src/utils/checkpointing/WriteArray.hpp b/src/utils/checkpointing/WriteArray.hpp
index 495fc5fcd..5cff412b8 100644
--- a/src/utils/checkpointing/WriteArray.hpp
+++ b/src/utils/checkpointing/WriteArray.hpp
@@ -29,9 +29,9 @@ write(HighFive::Group& group, const std::string& name, const Array<DataType>& ar
using data_type = std::remove_const_t<DataType>;
HighFive::DataSetCreateProps properties;
- properties.add(HighFive::Chunking(std::vector<hsize_t>{std::min(4ul * 1024ul * 1024ul, global_size)}));
- properties.add(HighFive::Shuffle());
- properties.add(HighFive::Deflate(3));
+ // properties.add(HighFive::Chunking(std::vector<hsize_t>{std::min(4ul * 1024ul * 1024ul, global_size)}));
+ // properties.add(HighFive::Shuffle());
+ // properties.add(HighFive::Deflate(3));
auto xfer_props = HighFive::DataTransferProps{};
xfer_props.add(HighFive::UseCollectiveIO{});
diff --git a/src/utils/checkpointing/WriteTable.hpp b/src/utils/checkpointing/WriteTable.hpp
index ad1336a6f..b52455950 100644
--- a/src/utils/checkpointing/WriteTable.hpp
+++ b/src/utils/checkpointing/WriteTable.hpp
@@ -36,9 +36,9 @@ write(HighFive::Group& group, const std::string& name, const Table<DataType>& ta
using data_type = std::remove_const_t<DataType>;
HighFive::DataSetCreateProps properties;
- properties.add(HighFive::Chunking(std::vector<hsize_t>{std::min(4ul * 1024ul * 1024ul, global_size)}));
- properties.add(HighFive::Shuffle());
- properties.add(HighFive::Deflate(3));
+ // properties.add(HighFive::Chunking(std::vector<hsize_t>{std::min(4ul * 1024ul * 1024ul, global_size)}));
+ // properties.add(HighFive::Shuffle());
+ // properties.add(HighFive::Deflate(3));
auto xfer_props = HighFive::DataTransferProps{};
xfer_props.add(HighFive::UseCollectiveIO{});
--
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