From 41deef32149d9b08ceceb58ff41f10e003b19cea Mon Sep 17 00:00:00 2001
From: Stephane Del Pino <stephane.delpino44@gmail.com>
Date: Wed, 6 Nov 2024 22:57:17 +0100
Subject: [PATCH] Add tests for language's node processors for checkpointing
---
.../node_processor/ASTNodeListProcessor.hpp | 3 +
.../node_processor/DoWhileProcessor.hpp | 3 +
src/language/node_processor/ForProcessor.hpp | 3 +
src/language/node_processor/IfProcessor.hpp | 4 +-
.../node_processor/WhileProcessor.hpp | 3 +
tests/CMakeLists.txt | 1 +
tests/test_BuiltinFunctionProcessor.cpp | 9 +
tests/test_ConcatExpressionProcessor.cpp | 8 +
tests/test_DoWhileProcessor.cpp | 7 +
tests/test_ForProcessor.cpp | 7 +
tests/test_FunctionProcessor.cpp | 9 +
tests/test_IfProcessor.cpp | 7 +
tests/test_WhileProcessor.cpp | 7 +
tests/test_checkpointing_Resume.cpp | 1020 +++++++++++++++++
14 files changed, 1090 insertions(+), 1 deletion(-)
create mode 100644 tests/test_checkpointing_Resume.cpp
diff --git a/src/language/node_processor/ASTNodeListProcessor.hpp b/src/language/node_processor/ASTNodeListProcessor.hpp
index 23b193275..4e34dcbe9 100644
--- a/src/language/node_processor/ASTNodeListProcessor.hpp
+++ b/src/language/node_processor/ASTNodeListProcessor.hpp
@@ -8,6 +8,7 @@
#include <language/utils/SymbolTable.hpp>
#include <utils/checkpointing/Checkpoint.hpp>
#include <utils/checkpointing/ResumingManager.hpp>
+#include <utils/pugs_config.hpp>
class ASTNodeListProcessor final : public INodeProcessor
{
@@ -26,6 +27,7 @@ class ASTNodeListProcessor final : public INodeProcessor
{
ResumingManager& resuming_manager = ResumingManager::getInstance();
if (resuming_manager.isResuming()) {
+#ifdef PUGS_HAS_HDF5
const size_t checkpoint_id = resuming_manager.checkpointId();
const ASTCheckpointsInfo& ast_checkpoint_info = ASTCheckpointsInfo::getInstance();
@@ -35,6 +37,7 @@ class ASTNodeListProcessor final : public INodeProcessor
i_child < m_node.children.size(); ++i_child) {
m_node.children[i_child]->execute(exec_policy);
}
+#endif // PUGS_HAS_HDF5
} else {
for (auto&& child : m_node.children) {
child->execute(exec_policy);
diff --git a/src/language/node_processor/DoWhileProcessor.hpp b/src/language/node_processor/DoWhileProcessor.hpp
index 76fdfa22b..352229edf 100644
--- a/src/language/node_processor/DoWhileProcessor.hpp
+++ b/src/language/node_processor/DoWhileProcessor.hpp
@@ -7,6 +7,7 @@
#include <language/utils/SymbolTable.hpp>
#include <utils/checkpointing/Checkpoint.hpp>
#include <utils/checkpointing/ResumingManager.hpp>
+#include <utils/pugs_config.hpp>
class DoWhileProcessor final : public INodeProcessor
{
@@ -28,6 +29,7 @@ class DoWhileProcessor final : public INodeProcessor
ResumingManager& resuming_manager = ResumingManager::getInstance();
do {
if (resuming_manager.isResuming()) {
+#ifdef PUGS_HAS_HDF5
const size_t checkpoint_id = resuming_manager.checkpointId();
const ASTCheckpointsInfo& ast_checkpoint_info = ASTCheckpointsInfo::getInstance();
@@ -35,6 +37,7 @@ class DoWhileProcessor final : public INodeProcessor
const size_t i_child = ast_checkpoint.getASTLocation()[resuming_manager.currentASTLevel()++];
Assert(i_child == 0);
+#endif // PUGS_HAS_HDF5
};
m_node.children[0]->execute(exec_until_jump);
if (not exec_until_jump.exec()) {
diff --git a/src/language/node_processor/ForProcessor.hpp b/src/language/node_processor/ForProcessor.hpp
index c68893c9f..caf202bdb 100644
--- a/src/language/node_processor/ForProcessor.hpp
+++ b/src/language/node_processor/ForProcessor.hpp
@@ -7,6 +7,7 @@
#include <language/utils/SymbolTable.hpp>
#include <utils/checkpointing/Checkpoint.hpp>
#include <utils/checkpointing/ResumingManager.hpp>
+#include <utils/pugs_config.hpp>
class ForProcessor final : public INodeProcessor
{
@@ -42,6 +43,7 @@ class ForProcessor final : public INodeProcessor
m_node.children[1]->execute(exec_policy)));
}()) {
if (resuming_manager.isResuming()) {
+#ifdef PUGS_HAS_HDF5
const size_t checkpoint_id = resuming_manager.checkpointId();
const ASTCheckpointsInfo& ast_checkpoint_info = ASTCheckpointsInfo::getInstance();
@@ -49,6 +51,7 @@ class ForProcessor final : public INodeProcessor
const size_t i_child = ast_checkpoint.getASTLocation()[resuming_manager.currentASTLevel()++];
Assert(i_child == 3);
+#endif // PUGS_HAS_HDF5
}
m_node.children[3]->execute(exec_until_jump);
if (not exec_until_jump.exec()) {
diff --git a/src/language/node_processor/IfProcessor.hpp b/src/language/node_processor/IfProcessor.hpp
index 7b49f46fa..bb41dc165 100644
--- a/src/language/node_processor/IfProcessor.hpp
+++ b/src/language/node_processor/IfProcessor.hpp
@@ -7,6 +7,7 @@
#include <language/utils/SymbolTable.hpp>
#include <utils/checkpointing/Checkpoint.hpp>
#include <utils/checkpointing/ResumingManager.hpp>
+#include <utils/pugs_config.hpp>
class IfProcessor final : public INodeProcessor
{
@@ -25,6 +26,7 @@ class IfProcessor final : public INodeProcessor
{
ResumingManager& resuming_manager = ResumingManager::getInstance();
if (resuming_manager.isResuming()) {
+#ifdef PUGS_HAS_HDF5
const size_t checkpoint_id = resuming_manager.checkpointId();
const ASTCheckpointsInfo& ast_checkpoint_info = ASTCheckpointsInfo::getInstance();
@@ -32,7 +34,7 @@ class IfProcessor final : public INodeProcessor
const size_t i_child = ast_checkpoint.getASTLocation()[resuming_manager.currentASTLevel()++];
m_node.children[i_child]->execute(exec_policy);
-
+#endif // PUGS_HAS_HDF5
} else {
const bool is_true = static_cast<bool>(std::visit( // LCOV_EXCL_LINE (false negative)
[](const auto& value) -> bool {
diff --git a/src/language/node_processor/WhileProcessor.hpp b/src/language/node_processor/WhileProcessor.hpp
index 994bcdd24..d36360573 100644
--- a/src/language/node_processor/WhileProcessor.hpp
+++ b/src/language/node_processor/WhileProcessor.hpp
@@ -7,6 +7,7 @@
#include <language/utils/SymbolTable.hpp>
#include <utils/checkpointing/Checkpoint.hpp>
#include <utils/checkpointing/ResumingManager.hpp>
+#include <utils/pugs_config.hpp>
class WhileProcessor final : public INodeProcessor
{
@@ -38,6 +39,7 @@ class WhileProcessor final : public INodeProcessor
m_node.children[0]->execute(exec_policy)));
}()) {
if (resuming_manager.isResuming()) {
+#ifdef PUGS_HAS_HDF5
const size_t checkpoint_id = resuming_manager.checkpointId();
const ASTCheckpointsInfo& ast_checkpoint_info = ASTCheckpointsInfo::getInstance();
@@ -45,6 +47,7 @@ class WhileProcessor final : public INodeProcessor
const size_t i_child = ast_checkpoint.getASTLocation()[resuming_manager.currentASTLevel()++];
Assert(i_child == 1);
+#endif // PUGS_HAS_HDF5
}
m_node.children[1]->execute(exec_until_jump);
diff --git a/tests/CMakeLists.txt b/tests/CMakeLists.txt
index bfde50850..0a6d69d39 100644
--- a/tests/CMakeLists.txt
+++ b/tests/CMakeLists.txt
@@ -172,6 +172,7 @@ add_executable (unit_tests
test_checkpointing_Checkpoint.cpp
test_checkpointing_PrintCheckpointInfo.cpp
test_checkpointing_PrintScriptFrom.cpp
+ test_checkpointing_Resume.cpp
test_checkpointing_ResumingManager.cpp
test_checkpointing_ResumingUtils.cpp
test_checkpointing_SetResumeFrom.cpp
diff --git a/tests/test_BuiltinFunctionProcessor.cpp b/tests/test_BuiltinFunctionProcessor.cpp
index 258a3a69f..398308097 100644
--- a/tests/test_BuiltinFunctionProcessor.cpp
+++ b/tests/test_BuiltinFunctionProcessor.cpp
@@ -10,6 +10,7 @@
#include <language/ast/ASTNodeTypeCleaner.hpp>
#include <language/ast/ASTSymbolTableBuilder.hpp>
#include <language/modules/MathModule.hpp>
+#include <language/node_processor/BuiltinFunctionProcessor.hpp>
#include <test_BuiltinFunctionRegister.hpp>
@@ -638,4 +639,12 @@ let x:R, x = tuple_ZtoR(3);
CHECK_BUILTIN_FUNCTION_EVALUATION_RESULT(data, "x", 0.5 * 3);
}
}
+
+ SECTION("expression type")
+ {
+ ASTNode node;
+ REQUIRE(BuiltinFunctionExpressionProcessor{nullptr}.type() ==
+ INodeProcessor::Type::builtin_function_expression_processor);
+ REQUIRE(BuiltinFunctionProcessor{node}.type() == INodeProcessor::Type::builtin_function_processor);
+ }
}
diff --git a/tests/test_ConcatExpressionProcessor.cpp b/tests/test_ConcatExpressionProcessor.cpp
index ca02f8030..ed2780397 100644
--- a/tests/test_ConcatExpressionProcessor.cpp
+++ b/tests/test_ConcatExpressionProcessor.cpp
@@ -10,6 +10,7 @@
#include <language/ast/ASTNodeExpressionBuilder.hpp>
#include <language/ast/ASTNodeTypeCleaner.hpp>
#include <language/ast/ASTSymbolTableBuilder.hpp>
+#include <language/node_processor/ConcatExpressionProcessor.hpp>
#include <language/utils/ASTPrinter.hpp>
#include <utils/Demangle.hpp>
#include <utils/Stringify.hpp>
@@ -205,4 +206,11 @@ TEST_CASE("ConcatExpressionProcessor", "[language]")
CHECK_CONCAT_EXPRESSION_RESULT(R"(let x:R^3x3, x = [[1,2,3],[4,5,6],[7,8,9]]; let s:string, s = "_foo"; s = x+s;)",
"s", os.str());
}
+
+ SECTION("expression type")
+ {
+ ASTNode node;
+ REQUIRE(ConcatExpressionProcessor<std::string, std::string>{node}.type() ==
+ INodeProcessor::Type::concat_expression_processor);
+ }
}
diff --git a/tests/test_DoWhileProcessor.cpp b/tests/test_DoWhileProcessor.cpp
index 01c170247..fffd4a7f4 100644
--- a/tests/test_DoWhileProcessor.cpp
+++ b/tests/test_DoWhileProcessor.cpp
@@ -10,6 +10,7 @@
#include <language/ast/ASTNodeExpressionBuilder.hpp>
#include <language/ast/ASTNodeTypeCleaner.hpp>
#include <language/ast/ASTSymbolTableBuilder.hpp>
+#include <language/node_processor/DoWhileProcessor.hpp>
#include <language/utils/ASTPrinter.hpp>
#include <utils/Demangle.hpp>
@@ -147,4 +148,10 @@ do {
CHECK_DO_WHILE_PROCESSOR_THROWS_WITH(data, "invalid implicit conversion: Z -> B");
}
}
+
+ SECTION("expression type")
+ {
+ ASTNode node;
+ REQUIRE(DoWhileProcessor{node}.type() == INodeProcessor::Type::do_while_processor);
+ }
}
diff --git a/tests/test_ForProcessor.cpp b/tests/test_ForProcessor.cpp
index b830dfd63..addc9c0b5 100644
--- a/tests/test_ForProcessor.cpp
+++ b/tests/test_ForProcessor.cpp
@@ -10,6 +10,7 @@
#include <language/ast/ASTNodeExpressionBuilder.hpp>
#include <language/ast/ASTNodeTypeCleaner.hpp>
#include <language/ast/ASTSymbolTableBuilder.hpp>
+#include <language/node_processor/ForProcessor.hpp>
#include <language/utils/ASTPrinter.hpp>
#include <utils/Demangle.hpp>
@@ -122,4 +123,10 @@ for(let l:N, l=0; l; ++l) {
CHECK_FOR_PROCESSOR_THROWS_WITH(data, "invalid implicit conversion: N -> B");
}
}
+
+ SECTION("expression type")
+ {
+ ASTNode node;
+ REQUIRE(ForProcessor{node}.type() == INodeProcessor::Type::for_processor);
+ }
}
diff --git a/tests/test_FunctionProcessor.cpp b/tests/test_FunctionProcessor.cpp
index ede3bd01b..aa8c75e99 100644
--- a/tests/test_FunctionProcessor.cpp
+++ b/tests/test_FunctionProcessor.cpp
@@ -9,6 +9,7 @@
#include <language/ast/ASTNodeExpressionBuilder.hpp>
#include <language/ast/ASTNodeTypeCleaner.hpp>
#include <language/ast/ASTSymbolTableBuilder.hpp>
+#include <language/node_processor/FunctionProcessor.hpp>
#include <utils/Demangle.hpp>
#include <utils/Stringify.hpp>
@@ -1954,4 +1955,12 @@ f(1, 2);
}
}
}
+
+ SECTION("expression type")
+ {
+ ASTNode node;
+ REQUIRE((FunctionProcessor{node, SymbolTable::Context{}}.type() == INodeProcessor::Type::function_processor));
+ REQUIRE((FunctionExpressionProcessor<double, double>{node}.type() ==
+ INodeProcessor::Type::function_expression_processor));
+ }
}
diff --git a/tests/test_IfProcessor.cpp b/tests/test_IfProcessor.cpp
index 38b687c79..0d71675b4 100644
--- a/tests/test_IfProcessor.cpp
+++ b/tests/test_IfProcessor.cpp
@@ -9,6 +9,7 @@
#include <language/ast/ASTNodeExpressionBuilder.hpp>
#include <language/ast/ASTNodeTypeCleaner.hpp>
#include <language/ast/ASTSymbolTableBuilder.hpp>
+#include <language/node_processor/IfProcessor.hpp>
#include <utils/Demangle.hpp>
#include <pegtl/string_input.hpp>
@@ -157,4 +158,10 @@ if (1.2) {
CHECK_IF_PROCESSOR_THROWS_WITH(data, "invalid implicit conversion: R -> B");
}
}
+
+ SECTION("expression type")
+ {
+ ASTNode node;
+ REQUIRE(IfProcessor{node}.type() == INodeProcessor::Type::if_processor);
+ }
}
diff --git a/tests/test_WhileProcessor.cpp b/tests/test_WhileProcessor.cpp
index 7641f9ab2..8b4e34527 100644
--- a/tests/test_WhileProcessor.cpp
+++ b/tests/test_WhileProcessor.cpp
@@ -10,6 +10,7 @@
#include <language/ast/ASTNodeExpressionBuilder.hpp>
#include <language/ast/ASTNodeTypeCleaner.hpp>
#include <language/ast/ASTSymbolTableBuilder.hpp>
+#include <language/node_processor/WhileProcessor.hpp>
#include <utils/Demangle.hpp>
#include <pegtl/string_input.hpp>
@@ -142,4 +143,10 @@ while(1) {
CHECK_WHILE_PROCESSOR_THROWS_WITH(data, "invalid implicit conversion: Z -> B");
}
}
+
+ SECTION("expression type")
+ {
+ ASTNode node;
+ REQUIRE(WhileProcessor{node}.type() == INodeProcessor::Type::while_processor);
+ }
}
diff --git a/tests/test_checkpointing_Resume.cpp b/tests/test_checkpointing_Resume.cpp
new file mode 100644
index 000000000..82ea9202b
--- /dev/null
+++ b/tests/test_checkpointing_Resume.cpp
@@ -0,0 +1,1020 @@
+#include <catch2/catch_approx.hpp>
+#include <catch2/catch_test_macros.hpp>
+#include <catch2/matchers/catch_matchers_predicate.hpp>
+
+#include <utils/checkpointing/Resume.hpp>
+#include <utils/pugs_config.hpp>
+
+#ifdef PUGS_HAS_HDF5
+
+#include <MeshDataBaseForTests.hpp>
+#include <dev/ParallelChecker.hpp>
+#include <language/ast/ASTBuilder.hpp>
+#include <language/ast/ASTExecutionStack.hpp>
+#include <language/ast/ASTModulesImporter.hpp>
+#include <language/ast/ASTNodeDataTypeBuilder.hpp>
+#include <language/ast/ASTNodeDeclarationToAffectationConverter.hpp>
+#include <language/ast/ASTNodeExpressionBuilder.hpp>
+#include <language/ast/ASTNodeTypeCleaner.hpp>
+#include <language/ast/ASTSymbolTableBuilder.hpp>
+#include <language/modules/MathModule.hpp>
+#include <language/utils/ASTCheckpointsInfo.hpp>
+#include <language/utils/CheckpointResumeRepository.hpp>
+#include <utils/ExecutionStatManager.hpp>
+#include <utils/checkpointing/SetResumeFrom.hpp>
+
+class ASTCheckpointsInfoTester
+{
+ private:
+ ASTCheckpointsInfo m_ast_checkpoint_info;
+
+ public:
+ ASTCheckpointsInfoTester(const ASTNode& root_node) : m_ast_checkpoint_info(root_node) {}
+ ~ASTCheckpointsInfoTester() = default;
+};
+
+#define RUN_AST(data) \
+ { \
+ ExecutionStatManager::create(); \
+ ParallelChecker::create(); \
+ CheckpointResumeRepository::create(); \
+ \
+ TAO_PEGTL_NAMESPACE::string_input input{data, "test.pgs"}; \
+ auto ast = ASTBuilder::build(input); \
+ \
+ ASTModulesImporter{*ast}; \
+ ASTNodeTypeCleaner<language::import_instruction>{*ast}; \
+ \
+ ASTSymbolTableBuilder{*ast}; \
+ ASTNodeDataTypeBuilder{*ast}; \
+ \
+ ASTNodeDeclarationToAffectationConverter{*ast}; \
+ ASTNodeTypeCleaner<language::var_declaration>{*ast}; \
+ ASTNodeTypeCleaner<language::fct_declaration>{*ast}; \
+ \
+ ASTNodeExpressionBuilder{*ast}; \
+ ExecutionPolicy exec_policy; \
+ ASTExecutionStack::create(); \
+ ASTCheckpointsInfoTester ast_cp_info_tester{*ast}; \
+ ast->execute(exec_policy); \
+ ASTExecutionStack::destroy(); \
+ ast->m_symbol_table->clearValues(); \
+ \
+ CheckpointResumeRepository::destroy(); \
+ ParallelChecker::destroy(); \
+ ExecutionStatManager::destroy(); \
+ ast->m_symbol_table->clearValues(); \
+ }
+
+#endif // PUGS_HAS_HDF5
+
+// clazy:excludeall=non-pod-global-static
+
+TEST_CASE("checkpointing_Resume", "[utils/checkpointing]")
+{
+#ifdef PUGS_HAS_HDF5
+
+ SECTION("general")
+ {
+ auto frobeniusNorm = [](const auto& A) {
+ using A_T = std::decay_t<decltype(A)>;
+ static_assert(is_tiny_matrix_v<A_T>);
+ return std::sqrt(trace(transpose(A) * A));
+ };
+
+ using R1 = TinyVector<1>;
+ using R2 = TinyVector<2>;
+ using R3 = TinyVector<3>;
+
+ using R11 = TinyMatrix<1>;
+ using R22 = TinyMatrix<2>;
+ using R33 = TinyMatrix<3>;
+
+ MeshDataBaseForTests::destroy();
+ GlobalVariableManager::instance().setMeshId(0);
+ GlobalVariableManager::instance().setConnectivityId(0);
+
+ ResumingManager::destroy();
+ ResumingManager::create();
+
+ std::string tmp_dirname;
+ {
+ {
+ if (parallel::rank() == 0) {
+ tmp_dirname = [&]() -> std::string {
+ std::string temp_filename = std::filesystem::temp_directory_path() / "pugs_checkpointing_XXXXXX";
+ return std::string{mkdtemp(&temp_filename[0])};
+ }();
+ }
+ parallel::broadcast(tmp_dirname, 0);
+ }
+ std::filesystem::path path = tmp_dirname;
+ const std::string filename = path / "checkpoint.h5";
+
+ ResumingManager::getInstance().setFilename(filename);
+ }
+
+ const std::string filename = ResumingManager::getInstance().filename();
+
+ std::string data = R"(
+import math;
+import mesh;
+import scheme;
+
+let f:R*R^3 -> R^3, (a, v) -> a * v;
+
+let alpha:R, alpha = 3.2;
+let u1:R^1, u1 = [0.3];
+let u2:R^2, u2 = [0.3, 1.2];
+let u3:R^3, u3 = [1, 2, 3];
+
+let A1:R^1x1, A1 = [[0.7]];
+let A2:R^2x2, A2 = [[1.4, 2.1], [0.6, 3]];
+let A3:R^3x3, A3 = [[1.1, 2.2, 3.3], [0.1, 0.2, 0.3], [1.6, 1.2, 1.4]];
+
+let m2d:mesh, m2d = cartesianMesh(0, [1,1], (10,10));
+
+let b_tuple:(B), b_tuple = (true, false, true);
+let n_tuple:(N), n_tuple = (1, 2, 3, 4);
+let z_tuple:(Z), z_tuple = (1, -2, 3, -4);
+let r_tuple:(R), r_tuple = (1.2, -2.4, 3.1, -4.3);
+let s_tuple:(string), s_tuple = ("foo", "bar");
+
+let r1_tuple:(R^1), r1_tuple = ([1], [2]);
+let r2_tuple:(R^2), r2_tuple = ([1.2, 3], [2.3, 4], [3.2, 1.4]);
+let r3_tuple:(R^3), r3_tuple = ([1.2, 0.2, 3], [2.3, -1, 4], [3.2, 2.1, 1.4]);
+
+let r11_tuple:(R^1x1), r11_tuple = ([[1.3]], [[2.4]]);
+let r22_tuple:(R^2x2), r22_tuple = ([[1.2, 3], [2.3, 4]], [[3.2, 1.4], [1.3, 5.2]]);
+let r33_tuple:(R^3x3), r33_tuple = ([[1.2, 0.2, 3], [2.3, -1, 4], [3.2, 2.1, 1.4]]);
+
+let m1d:mesh, m1d = cartesianMesh([0], [1], 10);
+
+let m3d:mesh, m3d = cartesianMesh(0, [1,1,1], (6,6,6));
+
+let b:B, b = false;
+let z:Z, z = -2;
+let s:string, s = "foobar";
+
+for(let i:N, i=0; i<3; ++i) {
+ checkpoint();
+
+ s = "foobar_"+i;
+ z += 1;
+ b = not b;
+
+ let g:R -> R^3, x -> [x, 1.2*x, 3];
+ u3 = f(alpha,u3);
+
+ checkpoint();
+}
+)";
+
+ const size_t initial_mesh_id = GlobalVariableManager::instance().getMeshId();
+ const size_t initial_connectivity_id = GlobalVariableManager::instance().getConnectivityId();
+
+ RUN_AST(data);
+
+ GlobalVariableManager::instance().setMeshId(initial_mesh_id);
+ GlobalVariableManager::instance().setConnectivityId(initial_connectivity_id);
+
+ { // Check checkpoint file
+
+ HighFive::File file(ResumingManager::getInstance().filename(), HighFive::File::ReadOnly);
+
+ HighFive::Group checkpoint = file.getGroup("/resuming_checkpoint");
+
+ REQUIRE(checkpoint.getAttribute("id").read<uint64_t>() == 1);
+ REQUIRE(checkpoint.getAttribute("checkpoint_number").read<uint64_t>() == 5);
+ REQUIRE(checkpoint.getAttribute("name").read<std::string>() == "checkpoint_5");
+
+ HighFive::Group symbol_table0 = checkpoint.getGroup("symbol table");
+ REQUIRE(symbol_table0.getAttribute("i").read<uint64_t>() == 2);
+
+ HighFive::Group symbol_table1 = symbol_table0.getGroup("symbol table");
+ REQUIRE(symbol_table1.getAttribute("alpha").read<double>() == 3.2);
+ REQUIRE(l2Norm(symbol_table1.getAttribute("u1").read<R1>() - R1{0.3}) == Catch::Approx(0).margin(1E-12));
+ REQUIRE(l2Norm(symbol_table1.getAttribute("u2").read<R2>() - R2{0.3, 1.2}) == Catch::Approx(0).margin(1E-12));
+ REQUIRE(l2Norm(symbol_table1.getAttribute("u3").read<R3>() - R3{32.768, 65.536, 98.304}) ==
+ Catch::Approx(0).margin(1E-12));
+ REQUIRE(symbol_table1.getAttribute("b").read<bool>() == true);
+ REQUIRE(symbol_table1.getAttribute("z").read<int64_t>() == 1);
+ REQUIRE(symbol_table1.getAttribute("s").read<std::string>() == "foobar_2");
+ REQUIRE(symbol_table1.getAttribute("A1").read<R11>()(0, 0) == Catch::Approx(0.7).margin(1E-12));
+ REQUIRE(frobeniusNorm(symbol_table1.getAttribute("A2").read<R22>() - R22{1.4, 2.1, 0.6, 3}) ==
+ Catch::Approx(0).margin(1E-12));
+ REQUIRE(frobeniusNorm(symbol_table1.getAttribute("A3").read<R33>() -
+ R33{1.1, 2.2, 3.3, 0.1, 0.2, 0.3, 1.6, 1.2, 1.4}) == Catch::Approx(0).margin(1E-12));
+ REQUIRE(symbol_table1.getAttribute("b_tuple").read<std::vector<bool>>() == std::vector<bool>{true, false, true});
+ REQUIRE(symbol_table1.getAttribute("n_tuple").read<std::vector<uint64_t>>() == std::vector<uint64_t>{1, 2, 3, 4});
+ REQUIRE(symbol_table1.getAttribute("z_tuple").read<std::vector<int64_t>>() == std::vector<int64_t>{1, -2, 3, -4});
+ REQUIRE(symbol_table1.getAttribute("r_tuple").read<std::vector<double>>() ==
+ std::vector<double>{1.2, -2.4, 3.1, -4.3});
+ REQUIRE(symbol_table1.getAttribute("s_tuple").read<std::vector<std::string>>() ==
+ std::vector<std::string>{"foo", "bar"});
+
+ REQUIRE(symbol_table1.getAttribute("r1_tuple").read<std::vector<R1>>() == std::vector{R1{1}, R1{2}});
+ REQUIRE(symbol_table1.getAttribute("r2_tuple").read<std::vector<R2>>() ==
+ std::vector{R2{1.2, 3}, R2{2.3, 4}, R2{3.2, 1.4}});
+ REQUIRE(symbol_table1.getAttribute("r3_tuple").read<std::vector<R3>>() ==
+ std::vector{R3{1.2, 0.2, 3}, R3{2.3, -1, 4}, R3{3.2, 2.1, 1.4}});
+
+ REQUIRE(symbol_table1.getAttribute("r11_tuple").read<std::vector<R11>>() == std::vector{R11{1.3}, R11{2.4}});
+ REQUIRE(symbol_table1.getAttribute("r22_tuple").read<std::vector<R22>>() ==
+ std::vector{R22{1.2, 3, 2.3, 4}, R22{3.2, 1.4, 1.3, 5.2}});
+ REQUIRE(symbol_table1.getAttribute("r33_tuple").read<std::vector<R33>>() ==
+ std::vector{R33{1.2, 0.2, 3, 2.3, -1, 4, 3.2, 2.1, 1.4}});
+
+ HighFive::Group embedded1 = symbol_table1.getGroup("embedded");
+
+ HighFive::Group m1d = embedded1.getGroup("m1d");
+ REQUIRE(m1d.getAttribute("type").read<std::string>() == "mesh");
+ REQUIRE(m1d.getAttribute("id").read<uint64_t>() == initial_mesh_id + (1 + 2 * (parallel::size() > 1)));
+
+ HighFive::Group m2d = embedded1.getGroup("m2d");
+ REQUIRE(m2d.getAttribute("type").read<std::string>() == "mesh");
+ REQUIRE(m2d.getAttribute("id").read<uint64_t>() == initial_mesh_id + (parallel::size() > 1));
+
+ HighFive::Group m3d = embedded1.getGroup("m3d");
+ REQUIRE(m3d.getAttribute("type").read<std::string>() == "mesh");
+ REQUIRE(m3d.getAttribute("id").read<uint64_t>() == initial_mesh_id + (2 + 3 * (parallel::size() > 1)));
+
+ HighFive::Group singleton = checkpoint.getGroup("singleton");
+ HighFive::Group global_variables = singleton.getGroup("global_variables");
+ REQUIRE(global_variables.getAttribute("connectivity_id").read<uint64_t>() ==
+ initial_connectivity_id + 3 * (1 + (parallel::size() > 1)));
+ REQUIRE(global_variables.getAttribute("mesh_id").read<uint64_t>() ==
+ initial_mesh_id + 3 * (1 + (parallel::size() > 1)));
+ HighFive::Group execution_info = singleton.getGroup("execution_info");
+ REQUIRE(execution_info.getAttribute("run_number").read<uint64_t>() == 1);
+
+ HighFive::Group connectivity = checkpoint.getGroup("connectivity");
+ HighFive::Group connectivity0 =
+ connectivity.getGroup(std::to_string(initial_connectivity_id + (parallel::size() > 1)));
+ REQUIRE(connectivity0.getAttribute("dimension").read<uint64_t>() == 2);
+ REQUIRE(connectivity0.getAttribute("id").read<uint64_t>() == initial_connectivity_id + (parallel::size() > 1));
+ REQUIRE(connectivity0.getAttribute("type").read<std::string>() == "unstructured");
+
+ HighFive::Group connectivity1 =
+ connectivity.getGroup(std::to_string(initial_connectivity_id + (1 + 2 * (parallel::size() > 1))));
+ REQUIRE(connectivity1.getAttribute("dimension").read<uint64_t>() == 1);
+ REQUIRE(connectivity1.getAttribute("id").read<uint64_t>() ==
+ initial_connectivity_id + (1 + 2 * (parallel::size() > 1)));
+ REQUIRE(connectivity1.getAttribute("type").read<std::string>() == "unstructured");
+
+ HighFive::Group connectivity2 =
+ connectivity.getGroup(std::to_string(initial_connectivity_id + (2 + 3 * (parallel::size() > 1))));
+ REQUIRE(connectivity2.getAttribute("dimension").read<uint64_t>() == 3);
+ REQUIRE(connectivity2.getAttribute("id").read<uint64_t>() ==
+ initial_connectivity_id + (2 + 3 * (parallel::size() > 1)));
+ REQUIRE(connectivity2.getAttribute("type").read<std::string>() == "unstructured");
+
+ HighFive::Group mesh = checkpoint.getGroup("mesh");
+ HighFive::Group mesh0 = mesh.getGroup(std::to_string(initial_mesh_id + (parallel::size() > 1)));
+ REQUIRE(mesh0.getAttribute("connectivity").read<uint64_t>() == initial_connectivity_id + (parallel::size() > 1));
+ REQUIRE(mesh0.getAttribute("dimension").read<uint64_t>() == 2);
+ REQUIRE(mesh0.getAttribute("id").read<uint64_t>() == initial_mesh_id + (parallel::size() > 1));
+ REQUIRE(mesh0.getAttribute("type").read<std::string>() == "polygonal");
+
+ HighFive::Group mesh1 = mesh.getGroup(std::to_string(initial_mesh_id + (1 + 2 * (parallel::size() > 1))));
+ REQUIRE(mesh1.getAttribute("connectivity").read<uint64_t>() ==
+ initial_connectivity_id + (1 + 2 * (parallel::size() > 1)));
+ REQUIRE(mesh1.getAttribute("dimension").read<uint64_t>() == 1);
+ REQUIRE(mesh1.getAttribute("id").read<uint64_t>() == initial_mesh_id + (1 + 2 * (parallel::size() > 1)));
+ REQUIRE(mesh1.getAttribute("type").read<std::string>() == "polygonal");
+
+ HighFive::Group mesh2 = mesh.getGroup(std::to_string(initial_mesh_id + (2 + 3 * (parallel::size() > 1))));
+ REQUIRE(mesh2.getAttribute("connectivity").read<uint64_t>() ==
+ initial_connectivity_id + (2 + 3 * (parallel::size() > 1)));
+ REQUIRE(mesh2.getAttribute("dimension").read<uint64_t>() == 3);
+ REQUIRE(mesh2.getAttribute("id").read<uint64_t>() == initial_mesh_id + (2 + 3 * (parallel::size() > 1)));
+ REQUIRE(mesh2.getAttribute("type").read<std::string>() == "polygonal");
+
+ HighFive::Group functions = checkpoint.getGroup("functions");
+ HighFive::Group f = functions.getGroup("f");
+ REQUIRE(f.getAttribute("id").read<uint64_t>() == 0);
+ REQUIRE(f.getAttribute("symbol_table_id").read<uint64_t>() == 1);
+ HighFive::Group g = functions.getGroup("g");
+ REQUIRE(g.getAttribute("id").read<uint64_t>() == 1);
+ REQUIRE(g.getAttribute("symbol_table_id").read<uint64_t>() == 0);
+ }
+
+ parallel::barrier();
+
+ setResumeFrom(filename, 3);
+
+ parallel::barrier();
+
+ { // Check checkpoint file
+
+ HighFive::File file(ResumingManager::getInstance().filename(), HighFive::File::ReadOnly);
+
+ HighFive::Group checkpoint = file.getGroup("/resuming_checkpoint");
+
+ REQUIRE(checkpoint.getAttribute("id").read<uint64_t>() == 1);
+ REQUIRE(checkpoint.getAttribute("checkpoint_number").read<uint64_t>() == 3);
+ REQUIRE(checkpoint.getAttribute("name").read<std::string>() == "checkpoint_3");
+
+ HighFive::Group symbol_table0 = checkpoint.getGroup("symbol table");
+ REQUIRE(symbol_table0.getAttribute("i").read<uint64_t>() == 1);
+
+ HighFive::Group symbol_table1 = symbol_table0.getGroup("symbol table");
+ REQUIRE(symbol_table1.getAttribute("alpha").read<double>() == 3.2);
+ REQUIRE(l2Norm(symbol_table1.getAttribute("u1").read<R1>() - R1{0.3}) == Catch::Approx(0).margin(1E-12));
+ REQUIRE(l2Norm(symbol_table1.getAttribute("u2").read<R2>() - R2{0.3, 1.2}) == Catch::Approx(0).margin(1E-12));
+ REQUIRE(l2Norm(symbol_table1.getAttribute("u3").read<R3>() - R3{10.24, 20.48, 30.72}) ==
+ Catch::Approx(0).margin(1E-12));
+ REQUIRE(symbol_table1.getAttribute("b").read<bool>() == false);
+ REQUIRE(symbol_table1.getAttribute("z").read<int64_t>() == 0);
+ REQUIRE(symbol_table1.getAttribute("s").read<std::string>() == "foobar_1");
+ REQUIRE(symbol_table1.getAttribute("A1").read<R11>()(0, 0) == Catch::Approx(0.7).margin(1E-12));
+ REQUIRE(frobeniusNorm(symbol_table1.getAttribute("A2").read<R22>() - R22{1.4, 2.1, 0.6, 3}) ==
+ Catch::Approx(0).margin(1E-12));
+ REQUIRE(frobeniusNorm(symbol_table1.getAttribute("A3").read<R33>() -
+ R33{1.1, 2.2, 3.3, 0.1, 0.2, 0.3, 1.6, 1.2, 1.4}) == Catch::Approx(0).margin(1E-12));
+
+ REQUIRE(symbol_table1.getAttribute("b_tuple").read<std::vector<bool>>() == std::vector<bool>{true, false, true});
+ REQUIRE(symbol_table1.getAttribute("n_tuple").read<std::vector<uint64_t>>() == std::vector<uint64_t>{1, 2, 3, 4});
+ REQUIRE(symbol_table1.getAttribute("z_tuple").read<std::vector<int64_t>>() == std::vector<int64_t>{1, -2, 3, -4});
+ REQUIRE(symbol_table1.getAttribute("r_tuple").read<std::vector<double>>() ==
+ std::vector<double>{1.2, -2.4, 3.1, -4.3});
+ REQUIRE(symbol_table1.getAttribute("s_tuple").read<std::vector<std::string>>() ==
+ std::vector<std::string>{"foo", "bar"});
+
+ REQUIRE(symbol_table1.getAttribute("r1_tuple").read<std::vector<R1>>() == std::vector{R1{1}, R1{2}});
+ REQUIRE(symbol_table1.getAttribute("r2_tuple").read<std::vector<R2>>() ==
+ std::vector{R2{1.2, 3}, R2{2.3, 4}, R2{3.2, 1.4}});
+ REQUIRE(symbol_table1.getAttribute("r3_tuple").read<std::vector<R3>>() ==
+ std::vector{R3{1.2, 0.2, 3}, R3{2.3, -1, 4}, R3{3.2, 2.1, 1.4}});
+
+ REQUIRE(symbol_table1.getAttribute("r11_tuple").read<std::vector<R11>>() == std::vector{R11{1.3}, R11{2.4}});
+ REQUIRE(symbol_table1.getAttribute("r22_tuple").read<std::vector<R22>>() ==
+ std::vector{R22{1.2, 3, 2.3, 4}, R22{3.2, 1.4, 1.3, 5.2}});
+ REQUIRE(symbol_table1.getAttribute("r33_tuple").read<std::vector<R33>>() ==
+ std::vector{R33{1.2, 0.2, 3, 2.3, -1, 4, 3.2, 2.1, 1.4}});
+
+ HighFive::Group embedded1 = symbol_table1.getGroup("embedded");
+
+ HighFive::Group m1d = embedded1.getGroup("m1d");
+ REQUIRE(m1d.getAttribute("type").read<std::string>() == "mesh");
+ REQUIRE(m1d.getAttribute("id").read<uint64_t>() == initial_mesh_id + (1 + 2 * (parallel::size() > 1)));
+
+ HighFive::Group m2d = embedded1.getGroup("m2d");
+ REQUIRE(m2d.getAttribute("type").read<std::string>() == "mesh");
+ REQUIRE(m2d.getAttribute("id").read<uint64_t>() == initial_mesh_id + (parallel::size() > 1));
+
+ HighFive::Group m3d = embedded1.getGroup("m3d");
+ REQUIRE(m3d.getAttribute("type").read<std::string>() == "mesh");
+ REQUIRE(m3d.getAttribute("id").read<uint64_t>() == initial_mesh_id + (2 + 3 * (parallel::size() > 1)));
+
+ HighFive::Group singleton = checkpoint.getGroup("singleton");
+ HighFive::Group global_variables = singleton.getGroup("global_variables");
+ REQUIRE(global_variables.getAttribute("connectivity_id").read<uint64_t>() ==
+ initial_connectivity_id + 3 * (1 + (parallel::size() > 1)));
+ REQUIRE(global_variables.getAttribute("mesh_id").read<uint64_t>() ==
+ initial_mesh_id + 3 * (1 + (parallel::size() > 1)));
+ HighFive::Group execution_info = singleton.getGroup("execution_info");
+ REQUIRE(execution_info.getAttribute("run_number").read<uint64_t>() == 1);
+
+ HighFive::Group connectivity = checkpoint.getGroup("connectivity");
+ HighFive::Group connectivity0 =
+ connectivity.getGroup(std::to_string(initial_connectivity_id + (parallel::size() > 1)));
+ REQUIRE(connectivity0.getAttribute("dimension").read<uint64_t>() == 2);
+ REQUIRE(connectivity0.getAttribute("id").read<uint64_t>() == initial_connectivity_id + (parallel::size() > 1));
+ REQUIRE(connectivity0.getAttribute("type").read<std::string>() == "unstructured");
+
+ HighFive::Group connectivity1 =
+ connectivity.getGroup(std::to_string(initial_connectivity_id + (1 + 2 * (parallel::size() > 1))));
+ REQUIRE(connectivity1.getAttribute("dimension").read<uint64_t>() == 1);
+ REQUIRE(connectivity1.getAttribute("id").read<uint64_t>() ==
+ initial_connectivity_id + (1 + 2 * (parallel::size() > 1)));
+ REQUIRE(connectivity1.getAttribute("type").read<std::string>() == "unstructured");
+
+ HighFive::Group connectivity2 =
+ connectivity.getGroup(std::to_string(initial_connectivity_id + (2 + 3 * (parallel::size() > 1))));
+ REQUIRE(connectivity2.getAttribute("dimension").read<uint64_t>() == 3);
+ REQUIRE(connectivity2.getAttribute("id").read<uint64_t>() ==
+ initial_connectivity_id + (2 + 3 * (parallel::size() > 1)));
+ REQUIRE(connectivity2.getAttribute("type").read<std::string>() == "unstructured");
+
+ HighFive::Group mesh = checkpoint.getGroup("mesh");
+ HighFive::Group mesh0 = mesh.getGroup(std::to_string(initial_mesh_id + (parallel::size() > 1)));
+ REQUIRE(mesh0.getAttribute("connectivity").read<uint64_t>() == initial_connectivity_id + (parallel::size() > 1));
+ REQUIRE(mesh0.getAttribute("dimension").read<uint64_t>() == 2);
+ REQUIRE(mesh0.getAttribute("id").read<uint64_t>() == initial_mesh_id + (parallel::size() > 1));
+ REQUIRE(mesh0.getAttribute("type").read<std::string>() == "polygonal");
+
+ HighFive::Group mesh1 = mesh.getGroup(std::to_string(initial_mesh_id + (1 + 2 * (parallel::size() > 1))));
+ REQUIRE(mesh1.getAttribute("connectivity").read<uint64_t>() ==
+ initial_connectivity_id + (1 + 2 * (parallel::size() > 1)));
+ REQUIRE(mesh1.getAttribute("dimension").read<uint64_t>() == 1);
+ REQUIRE(mesh1.getAttribute("id").read<uint64_t>() == initial_mesh_id + (1 + 2 * (parallel::size() > 1)));
+ REQUIRE(mesh1.getAttribute("type").read<std::string>() == "polygonal");
+
+ HighFive::Group mesh2 = mesh.getGroup(std::to_string(initial_mesh_id + (2 + 3 * (parallel::size() > 1))));
+ REQUIRE(mesh2.getAttribute("connectivity").read<uint64_t>() ==
+ initial_connectivity_id + (2 + 3 * (parallel::size() > 1)));
+ REQUIRE(mesh2.getAttribute("dimension").read<uint64_t>() == 3);
+ REQUIRE(mesh2.getAttribute("id").read<uint64_t>() == initial_mesh_id + (2 + 3 * (parallel::size() > 1)));
+ REQUIRE(mesh2.getAttribute("type").read<std::string>() == "polygonal");
+
+ HighFive::Group functions = checkpoint.getGroup("functions");
+ HighFive::Group f = functions.getGroup("f");
+ REQUIRE(f.getAttribute("id").read<uint64_t>() == 0);
+ REQUIRE(f.getAttribute("symbol_table_id").read<uint64_t>() == 1);
+ HighFive::Group g = functions.getGroup("g");
+ REQUIRE(g.getAttribute("id").read<uint64_t>() == 1);
+ REQUIRE(g.getAttribute("symbol_table_id").read<uint64_t>() == 0);
+ }
+
+ ResumingManager::destroy();
+ ResumingManager::create();
+ ResumingManager::getInstance().setFilename(filename);
+ ResumingManager::getInstance().setIsResuming(true);
+ GlobalVariableManager::instance().setMeshId(initial_mesh_id);
+ GlobalVariableManager::instance().setConnectivityId(initial_connectivity_id);
+
+ RUN_AST(data);
+
+ { // Check checkpoint file
+
+ HighFive::File file(ResumingManager::getInstance().filename(), HighFive::File::ReadOnly);
+
+ HighFive::Group checkpoint = file.getGroup("/resuming_checkpoint");
+
+ REQUIRE(checkpoint.getAttribute("id").read<uint64_t>() == 1);
+ REQUIRE(checkpoint.getAttribute("checkpoint_number").read<uint64_t>() == 5);
+ REQUIRE(checkpoint.getAttribute("name").read<std::string>() == "checkpoint_5");
+
+ HighFive::Group symbol_table0 = checkpoint.getGroup("symbol table");
+ REQUIRE(symbol_table0.getAttribute("i").read<uint64_t>() == 2);
+
+ HighFive::Group symbol_table1 = symbol_table0.getGroup("symbol table");
+ REQUIRE(symbol_table1.getAttribute("alpha").read<double>() == 3.2);
+ REQUIRE(l2Norm(symbol_table1.getAttribute("u1").read<R1>() - R1{0.3}) == Catch::Approx(0).margin(1E-12));
+ REQUIRE(l2Norm(symbol_table1.getAttribute("u2").read<R2>() - R2{0.3, 1.2}) == Catch::Approx(0).margin(1E-12));
+ REQUIRE(l2Norm(symbol_table1.getAttribute("u3").read<R3>() - R3{32.768, 65.536, 98.304}) ==
+ Catch::Approx(0).margin(1E-12));
+ REQUIRE(symbol_table1.getAttribute("b").read<bool>() == true);
+ REQUIRE(symbol_table1.getAttribute("z").read<int64_t>() == 1);
+ REQUIRE(symbol_table1.getAttribute("s").read<std::string>() == "foobar_2");
+ REQUIRE(symbol_table1.getAttribute("A1").read<R11>()(0, 0) == Catch::Approx(0.7).margin(1E-12));
+ REQUIRE(frobeniusNorm(symbol_table1.getAttribute("A2").read<R22>() - R22{1.4, 2.1, 0.6, 3}) ==
+ Catch::Approx(0).margin(1E-12));
+ REQUIRE(frobeniusNorm(symbol_table1.getAttribute("A3").read<R33>() -
+ R33{1.1, 2.2, 3.3, 0.1, 0.2, 0.3, 1.6, 1.2, 1.4}) == Catch::Approx(0).margin(1E-12));
+
+ REQUIRE(symbol_table1.getAttribute("b_tuple").read<std::vector<bool>>() == std::vector<bool>{true, false, true});
+ REQUIRE(symbol_table1.getAttribute("n_tuple").read<std::vector<uint64_t>>() == std::vector<uint64_t>{1, 2, 3, 4});
+ REQUIRE(symbol_table1.getAttribute("z_tuple").read<std::vector<int64_t>>() == std::vector<int64_t>{1, -2, 3, -4});
+ REQUIRE(symbol_table1.getAttribute("r_tuple").read<std::vector<double>>() ==
+ std::vector<double>{1.2, -2.4, 3.1, -4.3});
+ REQUIRE(symbol_table1.getAttribute("s_tuple").read<std::vector<std::string>>() ==
+ std::vector<std::string>{"foo", "bar"});
+
+ REQUIRE(symbol_table1.getAttribute("r1_tuple").read<std::vector<R1>>() == std::vector{R1{1}, R1{2}});
+ REQUIRE(symbol_table1.getAttribute("r2_tuple").read<std::vector<R2>>() ==
+ std::vector{R2{1.2, 3}, R2{2.3, 4}, R2{3.2, 1.4}});
+ REQUIRE(symbol_table1.getAttribute("r3_tuple").read<std::vector<R3>>() ==
+ std::vector{R3{1.2, 0.2, 3}, R3{2.3, -1, 4}, R3{3.2, 2.1, 1.4}});
+
+ REQUIRE(symbol_table1.getAttribute("r11_tuple").read<std::vector<R11>>() == std::vector{R11{1.3}, R11{2.4}});
+ REQUIRE(symbol_table1.getAttribute("r22_tuple").read<std::vector<R22>>() ==
+ std::vector{R22{1.2, 3, 2.3, 4}, R22{3.2, 1.4, 1.3, 5.2}});
+ REQUIRE(symbol_table1.getAttribute("r33_tuple").read<std::vector<R33>>() ==
+ std::vector{R33{1.2, 0.2, 3, 2.3, -1, 4, 3.2, 2.1, 1.4}});
+
+ HighFive::Group embedded1 = symbol_table1.getGroup("embedded");
+
+ HighFive::Group m1d = embedded1.getGroup("m1d");
+ REQUIRE(m1d.getAttribute("type").read<std::string>() == "mesh");
+ REQUIRE(m1d.getAttribute("id").read<uint64_t>() == initial_mesh_id + (1 + 2 * (parallel::size() > 1)));
+
+ HighFive::Group m2d = embedded1.getGroup("m2d");
+ REQUIRE(m2d.getAttribute("type").read<std::string>() == "mesh");
+ REQUIRE(m2d.getAttribute("id").read<uint64_t>() == initial_mesh_id + (parallel::size() > 1));
+
+ HighFive::Group m3d = embedded1.getGroup("m3d");
+ REQUIRE(m3d.getAttribute("type").read<std::string>() == "mesh");
+ REQUIRE(m3d.getAttribute("id").read<uint64_t>() == initial_mesh_id + (2 + 3 * (parallel::size() > 1)));
+
+ HighFive::Group singleton = checkpoint.getGroup("singleton");
+ HighFive::Group global_variables = singleton.getGroup("global_variables");
+ REQUIRE(global_variables.getAttribute("connectivity_id").read<uint64_t>() ==
+ initial_connectivity_id + 3 * (1 + (parallel::size() > 1)));
+ REQUIRE(global_variables.getAttribute("mesh_id").read<uint64_t>() ==
+ initial_mesh_id + 3 * (1 + (parallel::size() > 1)));
+ HighFive::Group execution_info = singleton.getGroup("execution_info");
+ REQUIRE(execution_info.getAttribute("run_number").read<uint64_t>() == 2);
+
+ HighFive::Group connectivity = checkpoint.getGroup("connectivity");
+ HighFive::Group connectivity0 =
+ connectivity.getGroup(std::to_string(initial_connectivity_id + (parallel::size() > 1)));
+ REQUIRE(connectivity0.getAttribute("dimension").read<uint64_t>() == 2);
+ REQUIRE(connectivity0.getAttribute("id").read<uint64_t>() == initial_connectivity_id + (parallel::size() > 1));
+ REQUIRE(connectivity0.getAttribute("type").read<std::string>() == "unstructured");
+
+ HighFive::Group connectivity1 =
+ connectivity.getGroup(std::to_string(initial_connectivity_id + (1 + 2 * (parallel::size() > 1))));
+ REQUIRE(connectivity1.getAttribute("dimension").read<uint64_t>() == 1);
+ REQUIRE(connectivity1.getAttribute("id").read<uint64_t>() ==
+ initial_connectivity_id + (1 + 2 * (parallel::size() > 1)));
+ REQUIRE(connectivity1.getAttribute("type").read<std::string>() == "unstructured");
+
+ HighFive::Group connectivity2 =
+ connectivity.getGroup(std::to_string(initial_connectivity_id + (2 + 3 * (parallel::size() > 1))));
+ REQUIRE(connectivity2.getAttribute("dimension").read<uint64_t>() == 3);
+ REQUIRE(connectivity2.getAttribute("id").read<uint64_t>() ==
+ initial_connectivity_id + (2 + 3 * (parallel::size() > 1)));
+ REQUIRE(connectivity2.getAttribute("type").read<std::string>() == "unstructured");
+
+ HighFive::Group mesh = checkpoint.getGroup("mesh");
+ HighFive::Group mesh0 = mesh.getGroup(std::to_string(initial_mesh_id + (parallel::size() > 1)));
+ REQUIRE(mesh0.getAttribute("connectivity").read<uint64_t>() == initial_connectivity_id + (parallel::size() > 1));
+ REQUIRE(mesh0.getAttribute("dimension").read<uint64_t>() == 2);
+ REQUIRE(mesh0.getAttribute("id").read<uint64_t>() == initial_mesh_id + (parallel::size() > 1));
+ REQUIRE(mesh0.getAttribute("type").read<std::string>() == "polygonal");
+
+ HighFive::Group mesh1 = mesh.getGroup(std::to_string(initial_mesh_id + (1 + 2 * (parallel::size() > 1))));
+ REQUIRE(mesh1.getAttribute("connectivity").read<uint64_t>() ==
+ initial_connectivity_id + (1 + 2 * (parallel::size() > 1)));
+ REQUIRE(mesh1.getAttribute("dimension").read<uint64_t>() == 1);
+ REQUIRE(mesh1.getAttribute("id").read<uint64_t>() == initial_mesh_id + (1 + 2 * (parallel::size() > 1)));
+ REQUIRE(mesh1.getAttribute("type").read<std::string>() == "polygonal");
+
+ HighFive::Group mesh2 = mesh.getGroup(std::to_string(initial_mesh_id + (2 + 3 * (parallel::size() > 1))));
+ REQUIRE(mesh2.getAttribute("connectivity").read<uint64_t>() ==
+ initial_connectivity_id + (2 + 3 * (parallel::size() > 1)));
+ REQUIRE(mesh2.getAttribute("dimension").read<uint64_t>() == 3);
+ REQUIRE(mesh2.getAttribute("id").read<uint64_t>() == initial_mesh_id + (2 + 3 * (parallel::size() > 1)));
+ REQUIRE(mesh2.getAttribute("type").read<std::string>() == "polygonal");
+
+ HighFive::Group functions = checkpoint.getGroup("functions");
+ HighFive::Group f = functions.getGroup("f");
+ REQUIRE(f.getAttribute("id").read<uint64_t>() == 0);
+ REQUIRE(f.getAttribute("symbol_table_id").read<uint64_t>() == 1);
+ HighFive::Group g = functions.getGroup("g");
+ REQUIRE(g.getAttribute("id").read<uint64_t>() == 1);
+ REQUIRE(g.getAttribute("symbol_table_id").read<uint64_t>() == 0);
+ }
+
+ parallel::barrier();
+ if (parallel::rank() == 0) {
+ std::filesystem::remove_all(std::filesystem::path{tmp_dirname});
+ }
+
+ // Revert to default value
+ ResumingManager::getInstance().setFilename("checkpoint.h5");
+ MeshDataBaseForTests::create();
+ }
+
+ SECTION("simple if")
+ {
+ ResumingManager::destroy();
+ ResumingManager::create();
+
+ std::string tmp_dirname;
+ {
+ {
+ if (parallel::rank() == 0) {
+ tmp_dirname = [&]() -> std::string {
+ std::string temp_filename = std::filesystem::temp_directory_path() / "pugs_checkpointing_XXXXXX";
+ return std::string{mkdtemp(&temp_filename[0])};
+ }();
+ }
+ parallel::broadcast(tmp_dirname, 0);
+ }
+ std::filesystem::path path = tmp_dirname;
+ const std::string filename = path / "checkpoint.h5";
+
+ ResumingManager::getInstance().setFilename(filename);
+ }
+
+ const std::string filename = ResumingManager::getInstance().filename();
+
+ std::string data = R"(
+let i:N, i = 3;
+
+if (true) {
+ checkpoint();
+}
+i = 7;
+checkpoint();
+)";
+
+ RUN_AST(data);
+
+ { // Check checkpoint file
+
+ HighFive::File file(ResumingManager::getInstance().filename(), HighFive::File::ReadOnly);
+
+ HighFive::Group checkpoint = file.getGroup("/resuming_checkpoint");
+
+ REQUIRE(checkpoint.getAttribute("id").read<uint64_t>() == 1);
+ REQUIRE(checkpoint.getAttribute("checkpoint_number").read<uint64_t>() == 1);
+ REQUIRE(checkpoint.getAttribute("name").read<std::string>() == "checkpoint_1");
+
+ HighFive::Group singleton = checkpoint.getGroup("singleton");
+ HighFive::Group execution_info = singleton.getGroup("execution_info");
+ REQUIRE(execution_info.getAttribute("run_number").read<uint64_t>() == 1);
+
+ HighFive::Group symbol_table0 = checkpoint.getGroup("symbol table");
+ REQUIRE(symbol_table0.getAttribute("i").read<uint64_t>() == 7);
+ }
+
+ parallel::barrier();
+
+ setResumeFrom(filename, 0);
+
+ parallel::barrier();
+
+ { // Check checkpoint file
+
+ HighFive::File file(ResumingManager::getInstance().filename(), HighFive::File::ReadOnly);
+
+ HighFive::Group checkpoint = file.getGroup("/resuming_checkpoint");
+ REQUIRE(checkpoint.getAttribute("id").read<uint64_t>() == 0);
+ REQUIRE(checkpoint.getAttribute("checkpoint_number").read<uint64_t>() == 0);
+ REQUIRE(checkpoint.getAttribute("name").read<std::string>() == "checkpoint_0");
+
+ HighFive::Group singleton = checkpoint.getGroup("singleton");
+ HighFive::Group execution_info = singleton.getGroup("execution_info");
+ REQUIRE(execution_info.getAttribute("run_number").read<uint64_t>() == 1);
+
+ HighFive::Group symbol_table0 = checkpoint.getGroup("symbol table");
+ REQUIRE(symbol_table0.getAttribute("i").read<uint64_t>() == 3);
+ }
+
+ ResumingManager::destroy();
+ ResumingManager::create();
+ ResumingManager::getInstance().setFilename(filename);
+ ResumingManager::getInstance().setIsResuming(true);
+
+ RUN_AST(data);
+
+ { // Check checkpoint file
+
+ HighFive::File file(ResumingManager::getInstance().filename(), HighFive::File::ReadOnly);
+
+ HighFive::Group checkpoint = file.getGroup("/resuming_checkpoint");
+ REQUIRE(checkpoint.getAttribute("id").read<uint64_t>() == 1);
+ REQUIRE(checkpoint.getAttribute("checkpoint_number").read<uint64_t>() == 1);
+ REQUIRE(checkpoint.getAttribute("name").read<std::string>() == "checkpoint_1");
+
+ HighFive::Group singleton = checkpoint.getGroup("singleton");
+ HighFive::Group execution_info = singleton.getGroup("execution_info");
+ REQUIRE(execution_info.getAttribute("run_number").read<uint64_t>() == 2);
+
+ HighFive::Group symbol_table0 = checkpoint.getGroup("symbol table");
+ REQUIRE(symbol_table0.getAttribute("i").read<uint64_t>() == 7);
+ }
+
+ parallel::barrier();
+ if (parallel::rank() == 0) {
+ std::filesystem::remove_all(std::filesystem::path{tmp_dirname});
+ }
+
+ // Revert to default value
+ ResumingManager::getInstance().setFilename("checkpoint.h5");
+ }
+
+ SECTION("simple else")
+ {
+ ResumingManager::destroy();
+ ResumingManager::create();
+
+ std::string tmp_dirname;
+ {
+ {
+ if (parallel::rank() == 0) {
+ tmp_dirname = [&]() -> std::string {
+ std::string temp_filename = std::filesystem::temp_directory_path() / "pugs_checkpointing_XXXXXX";
+ return std::string{mkdtemp(&temp_filename[0])};
+ }();
+ }
+ parallel::broadcast(tmp_dirname, 0);
+ }
+ std::filesystem::path path = tmp_dirname;
+ const std::string filename = path / "checkpoint.h5";
+
+ ResumingManager::getInstance().setFilename(filename);
+ }
+
+ const std::string filename = ResumingManager::getInstance().filename();
+
+ std::string data = R"(
+let i:N, i = 3;
+
+if (false) {
+} else {
+ checkpoint();
+}
+i = 7;
+checkpoint();
+)";
+
+ RUN_AST(data);
+
+ { // Check checkpoint file
+
+ HighFive::File file(ResumingManager::getInstance().filename(), HighFive::File::ReadOnly);
+
+ HighFive::Group checkpoint = file.getGroup("/resuming_checkpoint");
+
+ REQUIRE(checkpoint.getAttribute("id").read<uint64_t>() == 1);
+ REQUIRE(checkpoint.getAttribute("checkpoint_number").read<uint64_t>() == 1);
+ REQUIRE(checkpoint.getAttribute("name").read<std::string>() == "checkpoint_1");
+
+ HighFive::Group singleton = checkpoint.getGroup("singleton");
+ HighFive::Group execution_info = singleton.getGroup("execution_info");
+ REQUIRE(execution_info.getAttribute("run_number").read<uint64_t>() == 1);
+
+ HighFive::Group symbol_table0 = checkpoint.getGroup("symbol table");
+ REQUIRE(symbol_table0.getAttribute("i").read<uint64_t>() == 7);
+ }
+
+ parallel::barrier();
+
+ setResumeFrom(filename, 0);
+
+ parallel::barrier();
+
+ { // Check checkpoint file
+
+ HighFive::File file(ResumingManager::getInstance().filename(), HighFive::File::ReadOnly);
+
+ HighFive::Group checkpoint = file.getGroup("/resuming_checkpoint");
+ REQUIRE(checkpoint.getAttribute("id").read<uint64_t>() == 0);
+ REQUIRE(checkpoint.getAttribute("checkpoint_number").read<uint64_t>() == 0);
+ REQUIRE(checkpoint.getAttribute("name").read<std::string>() == "checkpoint_0");
+
+ HighFive::Group singleton = checkpoint.getGroup("singleton");
+ HighFive::Group execution_info = singleton.getGroup("execution_info");
+ REQUIRE(execution_info.getAttribute("run_number").read<uint64_t>() == 1);
+
+ HighFive::Group symbol_table0 = checkpoint.getGroup("symbol table");
+ REQUIRE(symbol_table0.getAttribute("i").read<uint64_t>() == 3);
+ }
+
+ ResumingManager::destroy();
+ ResumingManager::create();
+ ResumingManager::getInstance().setFilename(filename);
+ ResumingManager::getInstance().setIsResuming(true);
+
+ RUN_AST(data);
+
+ { // Check checkpoint file
+
+ HighFive::File file(ResumingManager::getInstance().filename(), HighFive::File::ReadOnly);
+
+ HighFive::Group checkpoint = file.getGroup("/resuming_checkpoint");
+ REQUIRE(checkpoint.getAttribute("id").read<uint64_t>() == 1);
+ REQUIRE(checkpoint.getAttribute("checkpoint_number").read<uint64_t>() == 1);
+ REQUIRE(checkpoint.getAttribute("name").read<std::string>() == "checkpoint_1");
+
+ HighFive::Group singleton = checkpoint.getGroup("singleton");
+ HighFive::Group execution_info = singleton.getGroup("execution_info");
+ REQUIRE(execution_info.getAttribute("run_number").read<uint64_t>() == 2);
+
+ HighFive::Group symbol_table0 = checkpoint.getGroup("symbol table");
+ REQUIRE(symbol_table0.getAttribute("i").read<uint64_t>() == 7);
+ }
+
+ parallel::barrier();
+ if (parallel::rank() == 0) {
+ std::filesystem::remove_all(std::filesystem::path{tmp_dirname});
+ }
+
+ // Revert to default value
+ ResumingManager::getInstance().setFilename("checkpoint.h5");
+ }
+
+ SECTION("simple do while")
+ {
+ ResumingManager::destroy();
+ ResumingManager::create();
+
+ std::string tmp_dirname;
+ {
+ {
+ if (parallel::rank() == 0) {
+ tmp_dirname = [&]() -> std::string {
+ std::string temp_filename = std::filesystem::temp_directory_path() / "pugs_checkpointing_XXXXXX";
+ return std::string{mkdtemp(&temp_filename[0])};
+ }();
+ }
+ parallel::broadcast(tmp_dirname, 0);
+ }
+ std::filesystem::path path = tmp_dirname;
+ const std::string filename = path / "checkpoint.h5";
+
+ ResumingManager::getInstance().setFilename(filename);
+ }
+
+ const std::string filename = ResumingManager::getInstance().filename();
+
+ std::string data = R"(
+let i:N, i = 3;
+
+do {
+ checkpoint();
+} while(false);
+
+i = 7;
+checkpoint();
+)";
+
+ RUN_AST(data);
+
+ { // Check checkpoint file
+
+ HighFive::File file(ResumingManager::getInstance().filename(), HighFive::File::ReadOnly);
+
+ HighFive::Group checkpoint = file.getGroup("/resuming_checkpoint");
+
+ REQUIRE(checkpoint.getAttribute("id").read<uint64_t>() == 1);
+ REQUIRE(checkpoint.getAttribute("checkpoint_number").read<uint64_t>() == 1);
+ REQUIRE(checkpoint.getAttribute("name").read<std::string>() == "checkpoint_1");
+
+ HighFive::Group singleton = checkpoint.getGroup("singleton");
+ HighFive::Group execution_info = singleton.getGroup("execution_info");
+ REQUIRE(execution_info.getAttribute("run_number").read<uint64_t>() == 1);
+
+ HighFive::Group symbol_table0 = checkpoint.getGroup("symbol table");
+ REQUIRE(symbol_table0.getAttribute("i").read<uint64_t>() == 7);
+ }
+
+ parallel::barrier();
+
+ setResumeFrom(filename, 0);
+
+ parallel::barrier();
+
+ { // Check checkpoint file
+
+ HighFive::File file(ResumingManager::getInstance().filename(), HighFive::File::ReadOnly);
+
+ HighFive::Group checkpoint = file.getGroup("/resuming_checkpoint");
+ REQUIRE(checkpoint.getAttribute("id").read<uint64_t>() == 0);
+ REQUIRE(checkpoint.getAttribute("checkpoint_number").read<uint64_t>() == 0);
+ REQUIRE(checkpoint.getAttribute("name").read<std::string>() == "checkpoint_0");
+
+ HighFive::Group singleton = checkpoint.getGroup("singleton");
+ HighFive::Group execution_info = singleton.getGroup("execution_info");
+ REQUIRE(execution_info.getAttribute("run_number").read<uint64_t>() == 1);
+
+ HighFive::Group symbol_table0 = checkpoint.getGroup("symbol table");
+ HighFive::Group symbol_table1 = symbol_table0.getGroup("symbol table");
+ REQUIRE(symbol_table1.getAttribute("i").read<uint64_t>() == 3);
+ }
+
+ ResumingManager::destroy();
+ ResumingManager::create();
+ ResumingManager::getInstance().setFilename(filename);
+ ResumingManager::getInstance().setIsResuming(true);
+
+ RUN_AST(data);
+
+ { // Check checkpoint file
+
+ HighFive::File file(ResumingManager::getInstance().filename(), HighFive::File::ReadOnly);
+
+ HighFive::Group checkpoint = file.getGroup("/resuming_checkpoint");
+ REQUIRE(checkpoint.getAttribute("id").read<uint64_t>() == 1);
+ REQUIRE(checkpoint.getAttribute("checkpoint_number").read<uint64_t>() == 1);
+ REQUIRE(checkpoint.getAttribute("name").read<std::string>() == "checkpoint_1");
+
+ HighFive::Group singleton = checkpoint.getGroup("singleton");
+ HighFive::Group execution_info = singleton.getGroup("execution_info");
+ REQUIRE(execution_info.getAttribute("run_number").read<uint64_t>() == 2);
+
+ HighFive::Group symbol_table0 = checkpoint.getGroup("symbol table");
+ REQUIRE(symbol_table0.getAttribute("i").read<uint64_t>() == 7);
+ }
+
+ parallel::barrier();
+ if (parallel::rank() == 0) {
+ std::filesystem::remove_all(std::filesystem::path{tmp_dirname});
+ }
+
+ // Revert to default value
+ ResumingManager::getInstance().setFilename("checkpoint.h5");
+ }
+
+ SECTION("simple while")
+ {
+ ResumingManager::destroy();
+ ResumingManager::create();
+
+ std::string tmp_dirname;
+ {
+ {
+ if (parallel::rank() == 0) {
+ tmp_dirname = [&]() -> std::string {
+ std::string temp_filename = std::filesystem::temp_directory_path() / "pugs_checkpointing_XXXXXX";
+ return std::string{mkdtemp(&temp_filename[0])};
+ }();
+ }
+ parallel::broadcast(tmp_dirname, 0);
+ }
+ std::filesystem::path path = tmp_dirname;
+ const std::string filename = path / "checkpoint.h5";
+
+ ResumingManager::getInstance().setFilename(filename);
+ }
+
+ const std::string filename = ResumingManager::getInstance().filename();
+
+ std::string data = R"(
+let i:N, i = 3;
+
+while (true) {
+ checkpoint();
+ break;
+};
+
+i = 7;
+checkpoint();
+)";
+
+ RUN_AST(data);
+
+ { // Check checkpoint file
+
+ HighFive::File file(ResumingManager::getInstance().filename(), HighFive::File::ReadOnly);
+
+ HighFive::Group checkpoint = file.getGroup("/resuming_checkpoint");
+
+ REQUIRE(checkpoint.getAttribute("id").read<uint64_t>() == 1);
+ REQUIRE(checkpoint.getAttribute("checkpoint_number").read<uint64_t>() == 1);
+ REQUIRE(checkpoint.getAttribute("name").read<std::string>() == "checkpoint_1");
+
+ HighFive::Group singleton = checkpoint.getGroup("singleton");
+ HighFive::Group execution_info = singleton.getGroup("execution_info");
+ REQUIRE(execution_info.getAttribute("run_number").read<uint64_t>() == 1);
+
+ HighFive::Group symbol_table0 = checkpoint.getGroup("symbol table");
+ REQUIRE(symbol_table0.getAttribute("i").read<uint64_t>() == 7);
+ }
+
+ parallel::barrier();
+
+ setResumeFrom(filename, 0);
+
+ parallel::barrier();
+
+ { // Check checkpoint file
+
+ HighFive::File file(ResumingManager::getInstance().filename(), HighFive::File::ReadOnly);
+
+ HighFive::Group checkpoint = file.getGroup("/resuming_checkpoint");
+ REQUIRE(checkpoint.getAttribute("id").read<uint64_t>() == 0);
+ REQUIRE(checkpoint.getAttribute("checkpoint_number").read<uint64_t>() == 0);
+ REQUIRE(checkpoint.getAttribute("name").read<std::string>() == "checkpoint_0");
+
+ HighFive::Group singleton = checkpoint.getGroup("singleton");
+ HighFive::Group execution_info = singleton.getGroup("execution_info");
+ REQUIRE(execution_info.getAttribute("run_number").read<uint64_t>() == 1);
+
+ HighFive::Group symbol_table0 = checkpoint.getGroup("symbol table");
+ HighFive::Group symbol_table1 = symbol_table0.getGroup("symbol table");
+ HighFive::Group symbol_table2 = symbol_table1.getGroup("symbol table");
+ REQUIRE(symbol_table2.getAttribute("i").read<uint64_t>() == 3);
+ }
+
+ ResumingManager::destroy();
+ ResumingManager::create();
+ ResumingManager::getInstance().setFilename(filename);
+ ResumingManager::getInstance().setIsResuming(true);
+
+ RUN_AST(data);
+
+ { // Check checkpoint file
+
+ HighFive::File file(ResumingManager::getInstance().filename(), HighFive::File::ReadOnly);
+
+ HighFive::Group checkpoint = file.getGroup("/resuming_checkpoint");
+ REQUIRE(checkpoint.getAttribute("id").read<uint64_t>() == 1);
+ REQUIRE(checkpoint.getAttribute("checkpoint_number").read<uint64_t>() == 1);
+ REQUIRE(checkpoint.getAttribute("name").read<std::string>() == "checkpoint_1");
+
+ HighFive::Group singleton = checkpoint.getGroup("singleton");
+ HighFive::Group execution_info = singleton.getGroup("execution_info");
+ REQUIRE(execution_info.getAttribute("run_number").read<uint64_t>() == 2);
+
+ HighFive::Group symbol_table0 = checkpoint.getGroup("symbol table");
+ REQUIRE(symbol_table0.getAttribute("i").read<uint64_t>() == 7);
+ }
+
+ parallel::barrier();
+ if (parallel::rank() == 0) {
+ std::filesystem::remove_all(std::filesystem::path{tmp_dirname});
+ }
+
+ // Revert to default value
+ ResumingManager::getInstance().setFilename("checkpoint.h5");
+ }
+#else // PUGS_HAS_HDF5
+ REQUIRE_THROWS_WITH(resume(), "error: checkpoint/resume mechanism requires HDF5");
+#endif // PUGS_HAS_HDF5
+}
--
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